Variant report

Variant	rs11944899
Chromosome Location	chr4:27125166-27125167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:27124853..27127254-chr4:27135739..27137834,2	MCF-7	breast:
2	chr4:27123166..27125780-chr4:27126657..27128387,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10003072	1.00[AMR][1000 genomes]
rs11946893	0.87[AFR][1000 genomes]
rs13434414	1.00[AMR][1000 genomes]
rs28368519	1.00[AMR][1000 genomes]
rs28371138	1.00[AMR][1000 genomes]
rs28445792	1.00[AMR][1000 genomes]
rs28453819	1.00[AMR][1000 genomes]
rs28493450	1.00[AMR][1000 genomes]
rs28638023	1.00[AMR][1000 genomes]
rs28647178	1.00[AMR][1000 genomes]
rs28653517	1.00[AMR][1000 genomes]
rs28688827	1.00[AMR][1000 genomes]
rs28733863	1.00[AMR][1000 genomes]
rs28819422	1.00[AMR][1000 genomes]
rs28850050	1.00[AMR][1000 genomes]
rs6821940	1.00[AMR][1000 genomes]
rs73813221	1.00[AMR][1000 genomes]
rs73813250	1.00[AMR][1000 genomes]
rs73813253	1.00[AMR][1000 genomes]
rs9997247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27122600-27125600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:27122600-27125800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:27122600-27126600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:27122800-27125600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:27122800-27126800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:27122800-27126800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:27122800-27127200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:27123000-27126000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:27123000-27126400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:27123000-27127000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:27123600-27126600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr4:27123800-27126600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:27123800-27126600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:27124200-27125800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr4:27124200-27126000	Enhancers	Fetal Intestine Large	intestine
16	chr4:27124400-27125200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr4:27124400-27125200	Enhancers	Colonic Mucosa	Colon
18	chr4:27124600-27125600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:27124600-27125600	Enhancers	Fetal Intestine Small	intestine
20	chr4:27124600-27125600	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr4:27124600-27125800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:27124600-27125800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr4:27124600-27129000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:27124800-27125200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:27124800-27125200	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr4:27124800-27125600	Enhancers	Duodenum Mucosa	Duodenum
27	chr4:27124800-27125800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:27124800-27125800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:27125000-27125200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr4:27125000-27125200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr4:27125000-27125200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr4:27125000-27125200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr4:27125000-27125400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:27125000-27125600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:27125000-27125800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:27125000-27128200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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