Variant report

Variant	rs28493450
Chromosome Location	chr4:27127113-27127114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:27124853..27127254-chr4:27135739..27137834,2	MCF-7	breast:
2	chr4:27123166..27125780-chr4:27126657..27128387,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10003072	1.00[AMR][1000 genomes]
rs11944899	1.00[AMR][1000 genomes]
rs13434414	1.00[AMR][1000 genomes]
rs28368519	1.00[AMR][1000 genomes]
rs28371138	1.00[AMR][1000 genomes]
rs28445792	1.00[AMR][1000 genomes]
rs28453819	1.00[AMR][1000 genomes]
rs28638023	1.00[AMR][1000 genomes]
rs28647178	1.00[AMR][1000 genomes]
rs28653517	1.00[AMR][1000 genomes]
rs28688827	1.00[AMR][1000 genomes]
rs28733863	1.00[AMR][1000 genomes]
rs28819422	1.00[AMR][1000 genomes]
rs28850050	1.00[AMR][1000 genomes]
rs6821940	1.00[AMR][1000 genomes]
rs73813221	1.00[AMR][1000 genomes]
rs73813250	1.00[AMR][1000 genomes]
rs73813253	1.00[AMR][1000 genomes]
rs9997247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999134	chr4:27115301-27270500	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv4280	chr4:27124809-27169850	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27122800-27127200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:27124600-27129000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:27125000-27128200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:27125600-27127600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:27125600-27127600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:27125600-27128200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:27125600-27129000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:27125600-27130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:27125600-27130800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:27125800-27128000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:27125800-27128600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:27125800-27128800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:27125800-27129000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:27125800-27129200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:27125800-27130400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:27126000-27128200	Weak transcription	Fetal Intestine Large	intestine
17	chr4:27126000-27129200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:27126000-27130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:27126200-27128200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:27126200-27128400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:27126200-27128800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:27126200-27129000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:27126200-27130600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr4:27126400-27129000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:27126600-27127800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:27126600-27127800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:27126600-27130200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:27126600-27131800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr4:27126800-27127600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:27126800-27128800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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