Variant report

Variant	rs11949257
Chromosome Location	chr5:94974703-94974704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11951747	1.00[AMR][1000 genomes]
rs11952880	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955539	1.00[AMR][1000 genomes]
rs11956137	1.00[AMR][1000 genomes]
rs11958444	1.00[AMR][1000 genomes]
rs11959023	1.00[AMR][1000 genomes]
rs11959236	1.00[AMR][1000 genomes]
rs57268622	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58799139	1.00[AMR][1000 genomes]
rs58937956	1.00[AMR][1000 genomes]
rs59564094	1.00[AMR][1000 genomes]
rs61400254	1.00[AMR][1000 genomes]
rs61733083	1.00[AMR][1000 genomes]
rs6870343	1.00[AMR][1000 genomes]
rs73147985	1.00[AMR][1000 genomes]
rs73147991	1.00[AMR][1000 genomes]
rs73149618	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149620	1.00[AMR][1000 genomes]
rs73149622	1.00[AMR][1000 genomes]
rs73149644	1.00[AMR][1000 genomes]
rs73149647	1.00[AMR][1000 genomes]
rs73149655	1.00[AMR][1000 genomes]
rs73149668	1.00[AMR][1000 genomes]
rs73149677	1.00[AMR][1000 genomes]
rs73149691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94968200-94979800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:94968400-94975200	Weak transcription	Pancreas	Pancrea
3	chr5:94969600-94976600	Weak transcription	Fetal Intestine Large	intestine
4	chr5:94973200-94975600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:94974600-94974800	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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