Variant report

Variant	rs59564094
Chromosome Location	chr5:95034140-95034141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:95033757..95034314-chr5:95063601..95064109,2	MCF-7	breast:
2	chr5:95032832..95035224-chr5:95072167..95074640,2	MCF-7	breast:
3	chr5:95032585..95034233-chr5:95078936..95081710,3	MCF-7	breast:
4	chr5:95031841..95037563-chr5:95043452..95050597,14	MCF-7	breast:
5	chr5:95032514..95039868-chr5:95065272..95071370,13	MCF-7	breast:
6	chr5:95032456..95034371-chr5:95094869..95096496,2	MCF-7	breast:
7	chr5:95033773..95034582-chr5:95071968..95072796,2	MCF-7	breast:
8	chr5:95031694..95034206-chr5:95053621..95055675,2	MCF-7	breast:
9	chr5:95033709..95034228-chr5:95048220..95048728,2	MCF-7	breast:
10	chr5:94979988..94984168-chr5:95032454..95035928,4	MCF-7	breast:
11	chr5:95030766..95038024-chr5:95063760..95069646,19	MCF-7	breast:
12	chr5:95032657..95035811-chr5:95043701..95049648,10	MCF-7	breast:
13	chr5:95029499..95032451-chr5:95032655..95034406,2	MCF-7	breast:
14	chr5:95027058..95030624-chr5:95030669..95034324,6	K562	blood:
15	chr5:95033693..95034324-chr5:95063331..95064070,2	MCF-7	breast:
16	chr5:95033623..95034330-chr5:95094770..95095377,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164292	Chromatin interaction
ENSG00000175449	Chromatin interaction
ENSG00000250240	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11949257	1.00[AMR][1000 genomes]
rs11951747	1.00[AMR][1000 genomes]
rs11952880	1.00[AMR][1000 genomes]
rs11955539	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958444	1.00[AMR][1000 genomes]
rs11959023	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11959236	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57268622	1.00[AMR][1000 genomes]
rs58799139	1.00[AMR][1000 genomes]
rs58937956	1.00[AMR][1000 genomes]
rs61400254	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733083	1.00[AMR][1000 genomes]
rs6870343	1.00[AMR][1000 genomes]
rs73147985	1.00[AMR][1000 genomes]
rs73147991	1.00[AMR][1000 genomes]
rs73149618	1.00[AMR][1000 genomes]
rs73149620	1.00[AMR][1000 genomes]
rs73149622	1.00[AMR][1000 genomes]
rs73149644	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149647	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149655	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149668	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149677	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95015000-95040400	Weak transcription	HSMMtube	muscle
2	chr5:95017600-95039800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:95031200-95036400	Enhancers	Placenta	Placenta
4	chr5:95031400-95046000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:95031600-95036800	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:95032800-95034800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:95033000-95034400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:95033000-95034400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:95033000-95034400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:95033200-95034200	Enhancers	Fetal Kidney	kidney
11	chr5:95033200-95035000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:95033200-95047000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:95033400-95034800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:95033400-95044400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:95033600-95034400	Enhancers	A549	lung
16	chr5:95033800-95034400	Enhancers	Adipose Nuclei	Adipose
17	chr5:95033800-95034400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr5:95033800-95034800	Flanking Active TSS	Hela-S3	cervix
19	chr5:95033800-95035000	Enhancers	Fetal Intestine Large	intestine
20	chr5:95034000-95034200	Enhancers	Pancreas	Pancrea
21	chr5:95034000-95034400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr5:95034000-95034600	Flanking Active TSS	K562	blood
23	chr5:95034000-95045800	Weak transcription	Ovary	ovary

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