Variant report

Variant	rs73149668
Chromosome Location	chr5:95029850-95029851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11949257	1.00[AMR][1000 genomes]
rs11951747	1.00[AMR][1000 genomes]
rs11952880	1.00[AMR][1000 genomes]
rs11955539	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956137	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958444	1.00[AMR][1000 genomes]
rs11959023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11959236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57268622	1.00[AMR][1000 genomes]
rs58799139	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58937956	1.00[AMR][1000 genomes]
rs59564094	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61400254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733083	1.00[AMR][1000 genomes]
rs6870343	1.00[AMR][1000 genomes]
rs73147985	1.00[AMR][1000 genomes]
rs73147991	1.00[AMR][1000 genomes]
rs73149618	1.00[AMR][1000 genomes]
rs73149620	1.00[AMR][1000 genomes]
rs73149622	1.00[AMR][1000 genomes]
rs73149644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149655	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95009200-95032400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:95015000-95040400	Weak transcription	HSMMtube	muscle
3	chr5:95017600-95039800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:95023000-95032200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:95024200-95031200	Weak transcription	Placenta	Placenta
6	chr5:95028800-95033000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:95029000-95032800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:95029800-95034000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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