Variant report

Variant	rs73147985
Chromosome Location	chr5:94947480-94947481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11949257	1.00[AMR][1000 genomes]
rs11951747	1.00[AMR][1000 genomes]
rs11952880	1.00[AMR][1000 genomes]
rs11955539	1.00[AMR][1000 genomes]
rs11956137	1.00[AMR][1000 genomes]
rs11958444	1.00[AMR][1000 genomes]
rs11959023	1.00[AMR][1000 genomes]
rs11959236	1.00[AMR][1000 genomes]
rs57268622	1.00[AMR][1000 genomes]
rs58799139	1.00[AMR][1000 genomes]
rs58937956	1.00[AMR][1000 genomes]
rs59564094	1.00[AMR][1000 genomes]
rs61400254	1.00[AMR][1000 genomes]
rs61733083	1.00[AMR][1000 genomes]
rs6870343	1.00[AMR][1000 genomes]
rs73147983	1.00[ASN][1000 genomes]
rs73147984	1.00[ASN][1000 genomes]
rs73147991	1.00[AMR][1000 genomes]
rs73149618	1.00[AMR][1000 genomes]
rs73149620	1.00[AMR][1000 genomes]
rs73149622	1.00[AMR][1000 genomes]
rs73149644	1.00[AMR][1000 genomes]
rs73149647	1.00[AMR][1000 genomes]
rs73149655	1.00[AMR][1000 genomes]
rs73149668	1.00[AMR][1000 genomes]
rs73149677	1.00[AMR][1000 genomes]
rs73149691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94927000-94948800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:94927000-94954200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr5:94927000-94954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:94927600-94951800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:94927800-94952200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:94928200-94952200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94928400-94948600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:94933600-94948600	Weak transcription	Pancreas	Pancrea
9	chr5:94937200-94948200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:94937400-94948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:94937600-94952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:94938000-94948400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94938000-94952400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:94938200-94954400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:94938800-94948400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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