Variant report

Variant	rs11949691
Chromosome Location	chr5:35894224-35894225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1008756	1.00[ASN][1000 genomes]
rs1010599	1.00[ASN][1000 genomes]
rs1010601	1.00[ASN][1000 genomes]
rs1025039	1.00[ASN][1000 genomes]
rs11950831	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11960511	0.81[EUR][1000 genomes]
rs1345827	1.00[ASN][1000 genomes]
rs16902573	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376481	1.00[ASN][1000 genomes]
rs1833907	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194224	0.91[ASN][1000 genomes]
rs2287900	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361403	0.91[ASN][1000 genomes]
rs3866449	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4024109	0.83[ASN][1000 genomes]
rs4024110	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55654952	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59030624	1.00[ASN][1000 genomes]
rs62351973	0.83[EUR][1000 genomes]
rs67207043	0.81[EUR][1000 genomes]
rs6859465	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6862692	1.00[ASN][1000 genomes]
rs6871116	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6873195	0.81[ASN][1000 genomes]
rs6878577	0.94[ASN][1000 genomes]
rs6878688	1.00[ASN][1000 genomes]
rs72742471	0.94[ASN][1000 genomes]
rs7702587	0.84[ASN][1000 genomes]
rs7702828	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7705615	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719334	0.94[ASN][1000 genomes]
rs7723452	0.91[ASN][1000 genomes]
rs9764914	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9765078	0.94[ASN][1000 genomes]
rs984164	1.00[ASN][1000 genomes]
rs990716	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35891200-35896400	Weak transcription	Thymus	Thymus
2	chr5:35891400-35902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:35893600-35899400	Enhancers	Dnd41	blood
4	chr5:35894200-35895200	Weak transcription	Fetal Thymus	thymus

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