Variant report

Variant	rs62351973
Chromosome Location	chr5:35890613-35890614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10491434	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10491435	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1053496	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11567685	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11567699	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11567701	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11567751	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11949691	0.83[EUR][1000 genomes]
rs11949736	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11950831	0.84[EUR][1000 genomes]
rs11960511	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1494554	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1494571	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1603071	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16902573	0.89[EUR][1000 genomes]
rs1833907	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2287900	0.89[EUR][1000 genomes]
rs3194051	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822733	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3866449	0.82[EUR][1000 genomes]
rs4024110	0.86[EUR][1000 genomes]
rs55654952	0.89[EUR][1000 genomes]
rs56133736	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57545288	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62355269	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62355271	0.84[EUR][1000 genomes]
rs62355272	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67207043	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859465	0.84[EUR][1000 genomes]
rs6871116	0.84[EUR][1000 genomes]
rs700179	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7702828	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7705615	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9764914	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs987107	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs990716	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35889200-35891000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:35889800-35891400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:35890000-35890800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr5:35890000-35891200	Enhancers	Thymus	Thymus
5	chr5:35890200-35891600	Enhancers	Placenta	Placenta
6	chr5:35890400-35891000	Enhancers	Ovary	ovary
7	chr5:35890400-35891400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:35890400-35891600	Enhancers	Fetal Thymus	thymus
9	chr5:35890400-35891800	Enhancers	NHLF	lung
10	chr5:35890400-35892200	Enhancers	Dnd41	blood
11	chr5:35890600-35891400	Enhancers	NHEK	skin

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