Variant report

Variant	rs56133736
Chromosome Location	chr5:35842908-35842909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10472982	0.84[EUR][1000 genomes]
rs10491434	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10491435	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1053496	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11567685	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11567699	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11567701	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11567751	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11949736	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950763	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11952663	0.86[ASN][1000 genomes]
rs11958811	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11960511	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1494554	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1494571	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1603071	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361395	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3194051	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35968532	0.94[ASN][1000 genomes]
rs3822733	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4263525	0.82[EUR][1000 genomes]
rs56113663	0.83[EUR][1000 genomes]
rs56123112	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57217480	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57545288	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57804084	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62351973	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62353742	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62355269	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62355271	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62355272	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67207043	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs700179	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7718034	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7725599	0.83[EUR][1000 genomes]
rs7733008	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9292614	0.84[EUR][1000 genomes]
rs987107	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3379714	chr5:35841120-35843568	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv3421897	chr5:35841595-35843093	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35841600-35845200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:35842400-35843600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:35842600-35843800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:35842800-35843200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr5:35842800-35845800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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