Variant report

Variant	rs35968532
Chromosome Location	chr5:35818869-35818870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35814232..35817438-chr5:35818379..35821437,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10472982	0.83[EUR][1000 genomes]
rs11949736	0.94[ASN][1000 genomes]
rs11950763	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952663	0.92[ASN][1000 genomes]
rs11958811	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603071	0.94[ASN][1000 genomes]
rs2361395	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35081631	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4263525	0.81[EUR][1000 genomes]
rs56113663	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56123112	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133736	0.94[ASN][1000 genomes]
rs57217480	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57804084	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62353742	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62355269	0.94[ASN][1000 genomes]
rs62355271	0.94[ASN][1000 genomes]
rs7718034	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725599	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7733008	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292614	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:35817600-35819200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr5:35817600-35820400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:35817800-35819000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:35817800-35819000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr5:35817800-35820000	Weak transcription	Fetal Thymus	thymus
8	chr5:35817800-35820600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:35817800-35821800	Enhancers	Primary T cells from cord blood	blood
10	chr5:35817800-35822000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:35817800-35822000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:35817800-35822200	Weak transcription	Dnd41	blood
13	chr5:35817800-35822600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:35818000-35819000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:35818000-35819000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:35818000-35819400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:35818000-35820000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:35818600-35821600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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