Variant report

Variant	rs7725599
Chromosome Location	chr5:35821747-35821748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10472982	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10491434	0.92[CEU][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap]
rs1053496	0.92[CEU][hapmap]
rs11567699	0.92[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs11567701	0.91[CEU][hapmap]
rs11567715	0.85[JPT][hapmap]
rs11567751	0.91[CEU][hapmap]
rs11949736	0.83[EUR][1000 genomes]
rs11950763	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11958811	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1494554	0.91[CEU][hapmap]
rs1494571	0.92[CEU][hapmap]
rs1603071	0.83[EUR][1000 genomes]
rs1833907	0.87[CEU][hapmap]
rs2229232	0.84[JPT][hapmap]
rs2361395	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3194051	0.92[CEU][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap]
rs35081631	0.80[EUR][1000 genomes]
rs35968532	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3822733	0.92[CEU][hapmap]
rs4263525	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4269308	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56113663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56123112	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56133736	0.83[EUR][1000 genomes]
rs57217480	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57545288	0.83[EUR][1000 genomes]
rs57804084	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62353742	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62355269	0.83[EUR][1000 genomes]
rs62355271	0.82[EUR][1000 genomes]
rs62355272	0.82[EUR][1000 genomes]
rs6451223	0.95[EUR][1000 genomes]
rs6871116	0.83[CEU][hapmap]
rs6872631	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs6893803	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs7718034	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7733008	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9292614	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs987107	0.92[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs990716	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:35817800-35821800	Enhancers	Primary T cells from cord blood	blood
4	chr5:35817800-35822000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr5:35817800-35822000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:35817800-35822200	Weak transcription	Dnd41	blood
7	chr5:35817800-35822600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:35819000-35830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:35819800-35822400	Enhancers	Thymus	Thymus
11	chr5:35819800-35823000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:35820000-35827800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr5:35820000-35827800	Enhancers	Fetal Thymus	thymus
14	chr5:35820400-35824200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:35820600-35821800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:35821200-35822200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:35821400-35822400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:35821600-35822000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr5:35821600-35822000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:35821600-35822200	Weak transcription	Duodenum Mucosa	Duodenum

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