Variant report

Variant	rs4263525
Chromosome Location	chr5:35825485-35825486
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10050705	1.00[ASN][1000 genomes]
rs10052964	1.00[ASN][1000 genomes]
rs10067863	1.00[ASN][1000 genomes]
rs10472982	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10491434	0.84[CEU][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs1053496	0.84[CEU][hapmap]
rs11567699	0.84[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs11567701	0.83[CEU][hapmap]
rs11567751	0.83[CEU][hapmap]
rs11949736	0.82[EUR][1000 genomes]
rs11950763	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11958811	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1494554	0.83[CEU][hapmap]
rs1494571	0.84[CEU][hapmap]
rs1603071	0.82[EUR][1000 genomes]
rs2361395	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3194051	0.84[CEU][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs35081631	0.80[EUR][1000 genomes]
rs35968532	0.81[EUR][1000 genomes]
rs3822733	0.84[CEU][hapmap]
rs4269308	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56113663	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56123112	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56133736	0.82[EUR][1000 genomes]
rs57217480	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57545288	0.82[EUR][1000 genomes]
rs57804084	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62353742	0.96[EUR][1000 genomes]
rs62355269	0.82[EUR][1000 genomes]
rs62355271	0.80[EUR][1000 genomes]
rs62355272	0.81[EUR][1000 genomes]
rs6451223	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6872082	1.00[ASN][1000 genomes]
rs6872233	1.00[ASN][1000 genomes]
rs6872264	1.00[ASN][1000 genomes]
rs6872631	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6893803	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7718034	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7725599	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7733008	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9292614	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs987107	0.84[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:35819000-35830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr5:35820000-35827800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr5:35820000-35827800	Enhancers	Fetal Thymus	thymus
6	chr5:35822800-35828000	Enhancers	Thymus	Thymus
7	chr5:35822800-35830800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:35823000-35826200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:35823000-35830600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr5:35823600-35830800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:35824000-35831200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr5:35824200-35830400	Enhancers	Primary T cells from cord blood	blood
13	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:35825000-35826000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr5:35825200-35826200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:35825400-35825600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr5:35825400-35826000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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