Variant report

Variant	rs62353742
Chromosome Location	chr5:35827030-35827031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CAPSL-1	chr5:35826948-35827120	ENSG00000248969.1

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10472982	0.98[EUR][1000 genomes]
rs11567685	0.80[EUR][1000 genomes]
rs11567699	0.80[EUR][1000 genomes]
rs11567701	0.80[EUR][1000 genomes]
rs11949736	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11950763	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952663	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11958811	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603071	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2361395	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35081631	0.81[EUR][1000 genomes]
rs35968532	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263525	0.96[EUR][1000 genomes]
rs4269308	0.91[EUR][1000 genomes]
rs56113663	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56123112	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133736	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57217480	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57545288	0.82[EUR][1000 genomes]
rs57804084	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62355269	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62355271	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62355272	0.83[EUR][1000 genomes]
rs6451223	0.93[EUR][1000 genomes]
rs7718034	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725599	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7733008	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292614	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:35819000-35830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr5:35820000-35827800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr5:35820000-35827800	Enhancers	Fetal Thymus	thymus
6	chr5:35822800-35828000	Enhancers	Thymus	Thymus
7	chr5:35822800-35830800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:35823000-35830600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr5:35823600-35830800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:35824000-35831200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr5:35824200-35830400	Enhancers	Primary T cells from cord blood	blood
12	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:35826200-35827200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr5:35826400-35829000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr5:35826600-35827400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:35826800-35831600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:35827000-35830600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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