Variant report
Variant | rs6859465 |
---|---|
Chromosome Location | chr5:35913641-35913642 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1008756 | 0.89[ASN][1000 genomes] |
rs1010599 | 0.89[ASN][1000 genomes] |
rs1010601 | 0.89[ASN][1000 genomes] |
rs1025039 | 0.89[ASN][1000 genomes] |
rs11949691 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11950831 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11960511 | 0.82[EUR][1000 genomes] |
rs1345827 | 0.89[ASN][1000 genomes] |
rs16902573 | 0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs17376481 | 0.89[ASN][1000 genomes] |
rs1833907 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2194224 | 0.81[ASN][1000 genomes] |
rs2287900 | 0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2361403 | 0.81[ASN][1000 genomes] |
rs3866449 | 0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4024110 | 0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs55654952 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs59030624 | 0.89[ASN][1000 genomes] |
rs62351973 | 0.84[EUR][1000 genomes] |
rs67207043 | 0.82[EUR][1000 genomes] |
rs6862692 | 0.89[ASN][1000 genomes] |
rs6871116 | 0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6878577 | 0.94[ASN][1000 genomes] |
rs6878688 | 0.89[ASN][1000 genomes] |
rs72742471 | 0.83[ASN][1000 genomes] |
rs7702828 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7705615 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7719334 | 0.94[ASN][1000 genomes] |
rs7723452 | 0.91[ASN][1000 genomes] |
rs9764914 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9765078 | 0.83[ASN][1000 genomes] |
rs984164 | 0.89[ASN][1000 genomes] |
rs990716 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv471011 | chr5:35861068-36003217 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv830261 | chr5:35863084-36018048 | Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1025695 | chr5:35902486-36036934 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv4794 | chr5:35906690-35934205 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:35912400-35920000 | Weak transcription | Thymus | Thymus |
2 | chr5:35913200-35918600 | Weak transcription | Dnd41 | blood |