Variant report

Variant	rs55654952
Chromosome Location	chr5:35911179-35911180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1008756	0.97[ASN][1000 genomes]
rs1010599	0.97[ASN][1000 genomes]
rs1010601	0.97[ASN][1000 genomes]
rs1025039	0.97[ASN][1000 genomes]
rs10491434	0.85[EUR][1000 genomes]
rs10491435	0.84[EUR][1000 genomes]
rs1053496	0.85[EUR][1000 genomes]
rs11567685	0.83[EUR][1000 genomes]
rs11567699	0.83[EUR][1000 genomes]
rs11567701	0.83[EUR][1000 genomes]
rs11567751	0.85[EUR][1000 genomes]
rs11949691	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11950831	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11960511	0.87[EUR][1000 genomes]
rs1345827	0.97[ASN][1000 genomes]
rs1494554	0.85[EUR][1000 genomes]
rs1494571	0.84[EUR][1000 genomes]
rs16902573	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17376481	0.97[ASN][1000 genomes]
rs1833907	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194224	0.89[ASN][1000 genomes]
rs2287900	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2361403	0.89[ASN][1000 genomes]
rs3194051	0.85[EUR][1000 genomes]
rs3822733	0.85[EUR][1000 genomes]
rs3866449	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4024109	0.81[ASN][1000 genomes]
rs4024110	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59030624	0.97[ASN][1000 genomes]
rs62351973	0.89[EUR][1000 genomes]
rs62355272	0.81[EUR][1000 genomes]
rs67207043	0.87[EUR][1000 genomes]
rs6859465	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6862692	0.97[ASN][1000 genomes]
rs6871116	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6878577	0.92[ASN][1000 genomes]
rs6878688	0.97[ASN][1000 genomes]
rs700179	0.85[EUR][1000 genomes]
rs72742471	0.92[ASN][1000 genomes]
rs7702587	0.82[ASN][1000 genomes]
rs7702828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7719334	0.92[ASN][1000 genomes]
rs7723452	0.89[ASN][1000 genomes]
rs9764914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9765078	0.92[ASN][1000 genomes]
rs984164	0.97[ASN][1000 genomes]
rs987107	0.85[EUR][1000 genomes]
rs990716	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv4794	chr5:35906690-35934205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35909400-35912000	Weak transcription	Thymus	Thymus
2	chr5:35909800-35912400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:35910800-35913200	ZNF genes & repeats	Dnd41	blood

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