Variant report

Variant	rs1195534
Chromosome Location	chr6:11648960-11648961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10947523	0.87[JPT][hapmap]
rs1150575	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1195535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189559	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12203489	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12210415	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12213930	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12663442	0.87[JPT][hapmap]
rs2104337	0.88[EUR][1000 genomes]
rs3857564	0.87[JPT][hapmap]
rs4713767	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713768	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs530313	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7750635	0.86[JPT][hapmap]
rs7772346	0.87[JPT][hapmap]
rs821438	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs821439	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9348937	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9348938	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9366851	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9366852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366868	0.81[JPT][hapmap]
rs9366872	0.86[JPT][hapmap]
rs9368807	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9368808	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9380426	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9394208	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11638400-11650000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:11640800-11650600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:11647000-11649800	Weak transcription	NHLF	lung
4	chr6:11647400-11649200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:11647400-11650200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:11647400-11653400	Weak transcription	Aorta	Aorta
7	chr6:11647600-11650400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:11647800-11649200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr6:11647800-11650400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:11648000-11649600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr6:11648000-11649600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr6:11648000-11649600	Strong transcription	HSMMtube	muscle
13	chr6:11648600-11649400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr6:11648600-11649600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:11648800-11649000	Strong transcription	HSMM	muscle
16	chr6:11648800-11651000	Enhancers	HUVEC	blood vessel
17	chr6:11648800-11654000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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