Variant report

Variant	rs12213930
Chromosome Location	chr6:11648113-11648114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10947523	0.82[JPT][hapmap]
rs1150575	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1150576	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1195534	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1195535	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12189559	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12202334	0.81[ASN][1000 genomes]
rs12203489	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12210415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12663442	0.82[JPT][hapmap]
rs2104337	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3857564	0.82[JPT][hapmap]
rs4713767	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs530313	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750635	0.82[JPT][hapmap]
rs7763722	0.83[ASN][1000 genomes]
rs7764199	0.83[ASN][1000 genomes]
rs7772346	0.82[JPT][hapmap]
rs821438	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs821439	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9348937	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9348938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9366851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9366852	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9366868	0.86[JPT][hapmap]
rs9366872	0.82[JPT][hapmap]
rs9368807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9368808	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9380426	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9394208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394211	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12213930	SIRT5	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11638400-11650000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:11640800-11650600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:11646200-11648800	Weak transcription	HSMM	muscle
4	chr6:11647000-11649800	Weak transcription	NHLF	lung
5	chr6:11647400-11648600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:11647400-11649200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:11647400-11650200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:11647400-11653400	Weak transcription	Aorta	Aorta
9	chr6:11647600-11650400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:11647800-11649200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr6:11647800-11650400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:11648000-11649600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr6:11648000-11649600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr6:11648000-11649600	Strong transcription	HSMMtube	muscle

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