Variant report

Variant	rs7764199
Chromosome Location	chr6:11657162-11657163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10485418	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10807142	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10947504	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947511	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947513	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947514	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947515	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947516	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947517	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947518	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947519	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947520	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947522	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947523	0.96[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947529	0.92[EUR][1000 genomes]
rs1150586	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs1150588	0.94[EUR][1000 genomes]
rs1150589	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs1150592	0.93[EUR][1000 genomes]
rs11752668	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11752767	0.93[EUR][1000 genomes]
rs11752868	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11753959	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11754457	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755543	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11758121	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11758138	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11759654	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11964548	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1206001	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs1206002	0.94[EUR][1000 genomes]
rs1206007	0.93[EUR][1000 genomes]
rs1206008	0.93[EUR][1000 genomes]
rs12173585	0.93[EUR][1000 genomes]
rs12175829	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12175836	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12191630	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12191903	0.96[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12191906	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12193984	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12200077	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12201911	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202334	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12204642	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12213930	0.83[ASN][1000 genomes]
rs12214396	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12216511	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12663442	0.88[CEU][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1413347	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1416451	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416452	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1546863	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2021340	0.94[EUR][1000 genomes]
rs2022016	0.93[EUR][1000 genomes]
rs210922	0.82[EUR][1000 genomes]
rs2142892	0.93[EUR][1000 genomes]
rs2142893	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2142894	0.93[EUR][1000 genomes]
rs2142895	0.93[EUR][1000 genomes]
rs2179268	0.93[EUR][1000 genomes]
rs2209259	0.94[EUR][1000 genomes]
rs2224855	0.94[EUR][1000 genomes]
rs2860114	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3857564	0.96[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4711397	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4711398	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713767	0.83[ASN][1000 genomes]
rs4713768	0.83[ASN][1000 genomes]
rs4713818	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713819	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713821	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713822	0.93[EUR][1000 genomes]
rs4713826	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62395208	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902790	0.94[EUR][1000 genomes]
rs6907010	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6907423	0.93[EUR][1000 genomes]
rs6914246	0.93[EUR][1000 genomes]
rs6917101	0.93[EUR][1000 genomes]
rs6917670	0.93[EUR][1000 genomes]
rs6934072	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6936345	0.93[EUR][1000 genomes]
rs7449935	0.93[EUR][1000 genomes]
rs7749947	0.91[EUR][1000 genomes]
rs7750635	0.96[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7760877	0.92[EUR][1000 genomes]
rs7763722	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772346	0.96[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7774946	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296117	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9348946	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9348948	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9348951	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357183	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357184	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9366859	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9366861	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9366868	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9366869	0.92[EUR][1000 genomes]
rs9366872	0.88[CEU][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs9366874	0.81[CHB][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.85[TSI][hapmap]
rs9368818	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368822	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9368823	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368824	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9368833	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380431	0.95[EUR][1000 genomes]
rs9380444	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380446	0.93[EUR][1000 genomes]
rs9380464	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs9394208	0.83[ASN][1000 genomes]
rs9394211	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394234	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394236	0.93[EUR][1000 genomes]
rs9394237	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394239	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394242	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394243	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394244	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9461985	0.96[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs9469793	0.94[EUR][1000 genomes]
rs9469816	0.93[EUR][1000 genomes]
rs9469826	0.93[EUR][1000 genomes]
rs9637952	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9637968	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11650000-11657200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:11651400-11658000	Enhancers	HUVEC	blood vessel
3	chr6:11653000-11657200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:11653000-11657200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:11653000-11657200	Enhancers	NHLF	lung
6	chr6:11653200-11657400	Enhancers	Fetal Lung	lung
7	chr6:11653800-11657600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:11654200-11657200	Enhancers	NH-A	brain
9	chr6:11655000-11657400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:11655200-11657200	Enhancers	Colon Smooth Muscle	Colon
11	chr6:11655600-11657200	Enhancers	A549	lung
12	chr6:11655800-11657200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:11655800-11657200	Enhancers	Brain Hippocampus Middle	brain
14	chr6:11656000-11657200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:11656000-11657200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:11656000-11657200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:11656000-11657200	Enhancers	Brain Anterior Caudate	brain
18	chr6:11656000-11657200	Enhancers	Brain Cingulate Gyrus	brain
19	chr6:11656000-11657200	Enhancers	Brain Substantia Nigra	brain
20	chr6:11656000-11657400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:11656000-11657400	Enhancers	Brain Germinal Matrix	brain
22	chr6:11656200-11657200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:11656200-11657200	Enhancers	Fetal Brain Female	brain
24	chr6:11656200-11657600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:11656200-11657600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:11656400-11657200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:11656400-11657600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:11656600-11657200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:11656600-11657600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:11656800-11657200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:11656800-11657200	Enhancers	Left Ventricle	heart
32	chr6:11656800-11660000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:11657000-11657200	Enhancers	Fetal Brain Male	brain
34	chr6:11657000-11657400	Genic enhancers	HSMM	muscle
35	chr6:11657000-11660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:11657000-11660200	Weak transcription	Right Atrium	heart
37	chr6:11657000-11682200	Weak transcription	HSMMtube	muscle

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