Variant report

Variant	rs7749947
Chromosome Location	chr6:11654542-11654543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11653818..11656919-chr6:12010370..12013835,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10485418	0.87[EUR][1000 genomes]
rs10807142	0.86[EUR][1000 genomes]
rs10947504	0.89[EUR][1000 genomes]
rs10947511	0.89[EUR][1000 genomes]
rs10947513	0.89[EUR][1000 genomes]
rs10947514	0.89[EUR][1000 genomes]
rs10947515	0.89[EUR][1000 genomes]
rs10947516	0.89[EUR][1000 genomes]
rs10947517	0.87[EUR][1000 genomes]
rs10947518	0.89[EUR][1000 genomes]
rs10947519	0.87[EUR][1000 genomes]
rs10947520	0.87[EUR][1000 genomes]
rs10947522	0.87[EUR][1000 genomes]
rs10947523	0.87[EUR][1000 genomes]
rs10947529	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1150586	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1150588	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1150589	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150592	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11752668	0.87[EUR][1000 genomes]
rs11752767	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11752868	0.89[EUR][1000 genomes]
rs11753959	0.87[EUR][1000 genomes]
rs11754457	0.87[EUR][1000 genomes]
rs11755543	0.87[EUR][1000 genomes]
rs11758121	0.89[EUR][1000 genomes]
rs11758138	0.89[EUR][1000 genomes]
rs11759654	0.87[EUR][1000 genomes]
rs11964548	0.86[EUR][1000 genomes]
rs1206001	0.94[EUR][1000 genomes]
rs1206002	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1206007	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1206008	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12173585	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12175829	0.89[EUR][1000 genomes]
rs12175836	0.89[EUR][1000 genomes]
rs12191630	0.87[EUR][1000 genomes]
rs12191903	0.86[EUR][1000 genomes]
rs12191906	0.87[EUR][1000 genomes]
rs12193984	0.87[EUR][1000 genomes]
rs12200077	0.86[EUR][1000 genomes]
rs12201911	0.87[EUR][1000 genomes]
rs12202334	0.90[EUR][1000 genomes]
rs12204642	0.86[EUR][1000 genomes]
rs12214396	0.87[EUR][1000 genomes]
rs12216511	0.87[EUR][1000 genomes]
rs12663442	0.82[EUR][1000 genomes]
rs1413347	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1416451	0.89[EUR][1000 genomes]
rs1416452	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1546863	0.87[EUR][1000 genomes]
rs2021340	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2022016	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210922	0.82[EUR][1000 genomes]
rs2142892	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142893	0.87[EUR][1000 genomes]
rs2142894	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2142895	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2179268	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2209259	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2224855	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2860114	0.90[EUR][1000 genomes]
rs3857564	0.87[EUR][1000 genomes]
rs4711397	0.89[EUR][1000 genomes]
rs4711398	0.89[EUR][1000 genomes]
rs4713818	0.88[EUR][1000 genomes]
rs4713819	0.89[EUR][1000 genomes]
rs4713821	0.89[EUR][1000 genomes]
rs4713822	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4713826	0.87[EUR][1000 genomes]
rs62395208	0.86[EUR][1000 genomes]
rs6902790	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6907010	0.89[EUR][1000 genomes]
rs6907423	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914246	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917101	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917670	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6934072	0.89[EUR][1000 genomes]
rs6936345	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7449935	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7750635	0.86[EUR][1000 genomes]
rs7760877	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7763722	0.91[EUR][1000 genomes]
rs7764199	0.91[EUR][1000 genomes]
rs7772346	0.87[EUR][1000 genomes]
rs7774946	0.86[EUR][1000 genomes]
rs9296117	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9348946	0.89[EUR][1000 genomes]
rs9348948	0.89[EUR][1000 genomes]
rs9348951	0.87[EUR][1000 genomes]
rs9357183	0.87[EUR][1000 genomes]
rs9366859	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9366861	0.87[EUR][1000 genomes]
rs9366868	0.86[EUR][1000 genomes]
rs9366869	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9366872	0.81[EUR][1000 genomes]
rs9368818	0.90[EUR][1000 genomes]
rs9368822	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368823	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9368824	0.89[EUR][1000 genomes]
rs9368833	0.87[EUR][1000 genomes]
rs9380431	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9380444	0.90[EUR][1000 genomes]
rs9380446	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9380464	0.87[EUR][1000 genomes]
rs9394211	0.90[EUR][1000 genomes]
rs9394234	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9394236	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394237	0.89[EUR][1000 genomes]
rs9394239	0.87[EUR][1000 genomes]
rs9394242	0.87[EUR][1000 genomes]
rs9394243	0.87[EUR][1000 genomes]
rs9394244	0.87[EUR][1000 genomes]
rs9461985	0.94[EUR][1000 genomes]
rs9469793	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9469816	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469826	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9637952	0.89[EUR][1000 genomes]
rs9637968	0.87[EUR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11650000-11655400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:11650000-11657000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:11650000-11657200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:11651000-11655000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:11651200-11655400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:11651400-11656000	Weak transcription	Brain Germinal Matrix	brain
7	chr6:11651400-11658000	Enhancers	HUVEC	blood vessel
8	chr6:11651800-11657000	Enhancers	Fetal Muscle Leg	muscle
9	chr6:11652200-11656000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:11653000-11654800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:11653000-11654800	Enhancers	Left Ventricle	heart
12	chr6:11653000-11656400	Enhancers	HSMM	muscle
13	chr6:11653000-11656600	Enhancers	NHDF-Ad	bronchial
14	chr6:11653000-11657200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:11653000-11657200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:11653000-11657200	Enhancers	NHLF	lung
17	chr6:11653200-11654800	Enhancers	Right Atrium	heart
18	chr6:11653200-11655000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:11653200-11656000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:11653200-11656000	Enhancers	GM12878-XiMat	blood
21	chr6:11653200-11656400	Enhancers	Osteobl	bone
22	chr6:11653200-11656600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:11653200-11656800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:11653200-11657000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:11653200-11657000	Enhancers	Fetal Stomach	stomach
26	chr6:11653200-11657400	Enhancers	Fetal Lung	lung
27	chr6:11653400-11654600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:11653400-11654600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:11653400-11654800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr6:11653400-11655000	Enhancers	Ovary	ovary
31	chr6:11653600-11655400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:11653800-11655800	Weak transcription	Fetal Brain Male	brain
33	chr6:11653800-11656000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:11653800-11657600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:11654000-11655200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:11654000-11655200	Enhancers	A549	lung
37	chr6:11654000-11655400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:11654000-11655800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:11654000-11656000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:11654000-11656000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:11654000-11656000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:11654000-11657000	Enhancers	HSMMtube	muscle
43	chr6:11654200-11655000	Enhancers	Fetal Heart	heart
44	chr6:11654200-11655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:11654200-11655200	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:11654200-11655200	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:11654200-11655200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:11654200-11655400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:11654200-11655400	Weak transcription	Adipose Nuclei	Adipose
50	chr6:11654200-11655600	Weak transcription	Hela-S3	cervix

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