Variant report

Variant	rs9380464
Chromosome Location	chr6:11706958-11706959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:11706881-11707131	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11704392..11707213-chr6:11707810..11709507,2	K562	blood:

Variant related genes	Relation type
ENSG00000207419	TF binding region

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10485418	0.88[EUR][1000 genomes]
rs10807142	0.89[EUR][1000 genomes]
rs10947504	0.88[EUR][1000 genomes]
rs10947511	0.90[EUR][1000 genomes]
rs10947513	0.90[EUR][1000 genomes]
rs10947514	0.90[EUR][1000 genomes]
rs10947515	0.90[EUR][1000 genomes]
rs10947516	0.90[EUR][1000 genomes]
rs10947517	0.89[EUR][1000 genomes]
rs10947518	0.90[EUR][1000 genomes]
rs10947519	0.88[EUR][1000 genomes]
rs10947520	0.88[EUR][1000 genomes]
rs10947522	0.88[EUR][1000 genomes]
rs10947523	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10947529	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1150586	0.89[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs1150588	0.93[EUR][1000 genomes]
rs1150589	0.89[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes]
rs1150592	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11752668	0.88[EUR][1000 genomes]
rs11752767	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11752868	0.90[EUR][1000 genomes]
rs11753959	0.88[EUR][1000 genomes]
rs11754457	0.88[EUR][1000 genomes]
rs11755543	0.88[EUR][1000 genomes]
rs11758121	0.90[EUR][1000 genomes]
rs11758138	0.90[EUR][1000 genomes]
rs11759654	0.88[EUR][1000 genomes]
rs11964548	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1206001	0.92[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs1206002	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206007	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206008	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12173585	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12175829	0.90[EUR][1000 genomes]
rs12175836	0.90[EUR][1000 genomes]
rs12191630	0.88[EUR][1000 genomes]
rs12191903	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs12191906	0.88[EUR][1000 genomes]
rs12193984	0.88[EUR][1000 genomes]
rs12200077	0.88[EUR][1000 genomes]
rs12201911	0.88[EUR][1000 genomes]
rs12202334	0.89[EUR][1000 genomes]
rs12204642	0.89[EUR][1000 genomes]
rs12214396	0.88[EUR][1000 genomes]
rs12216511	0.88[EUR][1000 genomes]
rs12663442	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs1413347	0.89[EUR][1000 genomes]
rs1416451	0.90[EUR][1000 genomes]
rs1416452	0.89[EUR][1000 genomes]
rs1546863	0.88[EUR][1000 genomes]
rs2021340	0.93[EUR][1000 genomes]
rs2022016	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs210922	0.84[EUR][1000 genomes]
rs2142892	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2142893	0.88[EUR][1000 genomes]
rs2142894	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142895	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2179268	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2209259	0.93[EUR][1000 genomes]
rs2224855	0.93[EUR][1000 genomes]
rs2860114	0.89[EUR][1000 genomes]
rs3857564	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs4711397	0.90[EUR][1000 genomes]
rs4711398	0.90[EUR][1000 genomes]
rs4713818	0.89[EUR][1000 genomes]
rs4713819	0.90[EUR][1000 genomes]
rs4713821	0.90[EUR][1000 genomes]
rs4713822	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4713826	0.88[EUR][1000 genomes]
rs62395208	0.87[EUR][1000 genomes]
rs6902790	0.93[EUR][1000 genomes]
rs6907010	0.90[EUR][1000 genomes]
rs6907423	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6914246	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917101	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917670	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6934072	0.90[EUR][1000 genomes]
rs6936345	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7449935	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7749947	0.87[EUR][1000 genomes]
rs7750635	0.92[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7760877	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763722	0.87[EUR][1000 genomes]
rs7764199	0.87[EUR][1000 genomes]
rs7772346	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs7774946	0.88[EUR][1000 genomes]
rs9296117	0.89[EUR][1000 genomes]
rs9348946	0.88[EUR][1000 genomes]
rs9348948	0.90[EUR][1000 genomes]
rs9348951	0.88[EUR][1000 genomes]
rs9357183	0.88[EUR][1000 genomes]
rs9366859	0.88[EUR][1000 genomes]
rs9366861	0.88[EUR][1000 genomes]
rs9366868	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs9366869	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366872	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs9368818	0.89[EUR][1000 genomes]
rs9368822	0.89[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368823	0.89[EUR][1000 genomes]
rs9368824	0.90[EUR][1000 genomes]
rs9368833	0.88[EUR][1000 genomes]
rs9380431	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380444	0.89[EUR][1000 genomes]
rs9380446	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394211	0.89[EUR][1000 genomes]
rs9394234	0.89[EUR][1000 genomes]
rs9394236	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394237	0.90[EUR][1000 genomes]
rs9394239	0.88[EUR][1000 genomes]
rs9394242	0.88[EUR][1000 genomes]
rs9394243	0.88[EUR][1000 genomes]
rs9394244	0.88[EUR][1000 genomes]
rs9461985	0.92[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs9469793	0.93[EUR][1000 genomes]
rs9469816	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469826	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9637952	0.88[EUR][1000 genomes]
rs9637968	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11688800-11711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:11701000-11707200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:11701800-11708400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:11701800-11713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:11702600-11708400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:11702800-11708400	Weak transcription	HSMMtube	muscle
7	chr6:11703200-11711200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:11703200-11711400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:11703200-11711400	Weak transcription	HSMM	muscle
10	chr6:11703400-11708000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:11703400-11710400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:11703400-11710400	Weak transcription	Spleen	Spleen
13	chr6:11703600-11712600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:11703800-11711200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:11704200-11714800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:11705400-11710400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:11705600-11708000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:11705800-11712000	Weak transcription	Adipose Nuclei	Adipose
19	chr6:11706600-11707200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:11706600-11712000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:11706800-11708000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:11706800-11708000	Weak transcription	Lung	lung

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