Variant report

Variant	rs9394236
Chromosome Location	chr6:11681241-11681242
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11668223..11671147-chr6:11680423..11683387,2	MCF-7	breast:

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10485418	0.94[EUR][1000 genomes]
rs10807142	0.93[EUR][1000 genomes]
rs10947504	0.94[EUR][1000 genomes]
rs10947511	0.96[EUR][1000 genomes]
rs10947513	0.96[EUR][1000 genomes]
rs10947514	0.96[EUR][1000 genomes]
rs10947515	0.96[EUR][1000 genomes]
rs10947516	0.96[EUR][1000 genomes]
rs10947517	0.94[EUR][1000 genomes]
rs10947518	0.96[EUR][1000 genomes]
rs10947519	0.94[EUR][1000 genomes]
rs10947520	0.94[EUR][1000 genomes]
rs10947522	0.94[EUR][1000 genomes]
rs10947523	0.94[EUR][1000 genomes]
rs10947529	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1150586	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1150588	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1150589	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1150592	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752668	0.94[EUR][1000 genomes]
rs11752767	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752868	0.96[EUR][1000 genomes]
rs11753959	0.94[EUR][1000 genomes]
rs11754457	0.94[EUR][1000 genomes]
rs11755543	0.94[EUR][1000 genomes]
rs11758121	0.96[EUR][1000 genomes]
rs11758138	0.96[EUR][1000 genomes]
rs11759654	0.94[EUR][1000 genomes]
rs11964548	0.93[EUR][1000 genomes]
rs1206001	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1206002	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206007	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206008	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12173585	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12175829	0.96[EUR][1000 genomes]
rs12175836	0.96[EUR][1000 genomes]
rs12191630	0.94[EUR][1000 genomes]
rs12191903	0.93[EUR][1000 genomes]
rs12191906	0.94[EUR][1000 genomes]
rs12193984	0.94[EUR][1000 genomes]
rs12200077	0.93[EUR][1000 genomes]
rs12201911	0.94[EUR][1000 genomes]
rs12202334	0.95[EUR][1000 genomes]
rs12204642	0.93[EUR][1000 genomes]
rs12214396	0.94[EUR][1000 genomes]
rs12216511	0.94[EUR][1000 genomes]
rs12663442	0.89[EUR][1000 genomes]
rs1413347	0.95[EUR][1000 genomes]
rs1416451	0.96[EUR][1000 genomes]
rs1416452	0.95[EUR][1000 genomes]
rs1546863	0.94[EUR][1000 genomes]
rs2021340	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2022016	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210922	0.89[EUR][1000 genomes]
rs2142892	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142893	0.94[EUR][1000 genomes]
rs2142894	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142895	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179268	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2209259	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2224855	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2860114	0.95[EUR][1000 genomes]
rs3857564	0.94[EUR][1000 genomes]
rs4711397	0.96[EUR][1000 genomes]
rs4711398	0.96[EUR][1000 genomes]
rs4713818	0.95[EUR][1000 genomes]
rs4713819	0.96[EUR][1000 genomes]
rs4713821	0.96[EUR][1000 genomes]
rs4713822	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713826	0.94[EUR][1000 genomes]
rs62395208	0.93[EUR][1000 genomes]
rs6902790	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6907010	0.96[EUR][1000 genomes]
rs6907423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6914246	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917101	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917670	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6934072	0.96[EUR][1000 genomes]
rs6936345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449935	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7749947	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7750635	0.93[EUR][1000 genomes]
rs7760877	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7763722	0.93[EUR][1000 genomes]
rs7764199	0.93[EUR][1000 genomes]
rs7772346	0.94[EUR][1000 genomes]
rs7774946	0.93[EUR][1000 genomes]
rs9296117	0.95[EUR][1000 genomes]
rs9348946	0.94[EUR][1000 genomes]
rs9348948	0.96[EUR][1000 genomes]
rs9348951	0.94[EUR][1000 genomes]
rs9357183	0.94[EUR][1000 genomes]
rs9357184	0.82[EUR][1000 genomes]
rs9366859	0.94[EUR][1000 genomes]
rs9366861	0.94[EUR][1000 genomes]
rs9366868	0.93[EUR][1000 genomes]
rs9366869	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9366872	0.88[EUR][1000 genomes]
rs9368818	0.95[EUR][1000 genomes]
rs9368822	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368823	0.95[EUR][1000 genomes]
rs9368824	0.96[EUR][1000 genomes]
rs9368833	0.94[EUR][1000 genomes]
rs9380431	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380444	0.95[EUR][1000 genomes]
rs9380446	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380464	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394211	0.95[EUR][1000 genomes]
rs9394234	0.95[EUR][1000 genomes]
rs9394237	0.96[EUR][1000 genomes]
rs9394239	0.94[EUR][1000 genomes]
rs9394242	0.94[EUR][1000 genomes]
rs9394243	0.94[EUR][1000 genomes]
rs9394244	0.94[EUR][1000 genomes]
rs9461985	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469793	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469816	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637952	0.94[EUR][1000 genomes]
rs9637968	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11657000-11682200	Weak transcription	HSMMtube	muscle
2	chr6:11675400-11682000	Weak transcription	HSMM	muscle
3	chr6:11681200-11681600	Enhancers	NHEK	skin

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