Variant report

Variant	rs1150586
Chromosome Location	chr6:11659386-11659387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11658704..11660656-chr6:11912465..11915132,2	K562	blood:
2	chr6:11658954..11661445-chr6:12012062..12013659,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10485418	0.92[EUR][1000 genomes]
rs10807142	0.92[EUR][1000 genomes]
rs10947504	0.95[EUR][1000 genomes]
rs10947511	0.95[EUR][1000 genomes]
rs10947513	0.95[EUR][1000 genomes]
rs10947514	0.95[EUR][1000 genomes]
rs10947515	0.95[EUR][1000 genomes]
rs10947516	0.95[EUR][1000 genomes]
rs10947517	0.93[EUR][1000 genomes]
rs10947518	0.95[EUR][1000 genomes]
rs10947519	0.92[EUR][1000 genomes]
rs10947520	0.92[EUR][1000 genomes]
rs10947522	0.92[EUR][1000 genomes]
rs10947523	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10947529	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1150588	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1150589	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1150592	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11752668	0.92[EUR][1000 genomes]
rs11752767	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11752868	0.95[EUR][1000 genomes]
rs11753959	0.92[EUR][1000 genomes]
rs11754457	0.92[EUR][1000 genomes]
rs11755543	0.92[EUR][1000 genomes]
rs11758121	0.95[EUR][1000 genomes]
rs11758138	0.95[EUR][1000 genomes]
rs11759654	0.92[EUR][1000 genomes]
rs11964548	0.92[EUR][1000 genomes]
rs1206001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1206007	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1206008	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12173585	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12175829	0.95[EUR][1000 genomes]
rs12175836	0.95[EUR][1000 genomes]
rs12191630	0.92[EUR][1000 genomes]
rs12191903	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12191906	0.92[EUR][1000 genomes]
rs12193984	0.92[EUR][1000 genomes]
rs12200077	0.92[EUR][1000 genomes]
rs12201911	0.92[EUR][1000 genomes]
rs12202334	0.96[EUR][1000 genomes]
rs12204642	0.92[EUR][1000 genomes]
rs12214396	0.92[EUR][1000 genomes]
rs12216511	0.92[EUR][1000 genomes]
rs12663442	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1413347	0.96[EUR][1000 genomes]
rs1416451	0.95[EUR][1000 genomes]
rs1416452	0.96[EUR][1000 genomes]
rs1546863	0.92[EUR][1000 genomes]
rs2021340	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2022016	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210922	0.88[EUR][1000 genomes]
rs2142892	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2142893	0.92[EUR][1000 genomes]
rs2142894	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2142895	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2179268	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2209259	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2224855	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2860114	0.96[EUR][1000 genomes]
rs3857564	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4711397	0.95[EUR][1000 genomes]
rs4711398	0.95[EUR][1000 genomes]
rs4713818	0.94[EUR][1000 genomes]
rs4713819	0.95[EUR][1000 genomes]
rs4713821	0.95[EUR][1000 genomes]
rs4713822	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4713826	0.92[EUR][1000 genomes]
rs62395208	0.92[EUR][1000 genomes]
rs6902790	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6907010	0.95[EUR][1000 genomes]
rs6907423	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914246	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917101	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917670	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6934072	0.95[EUR][1000 genomes]
rs6936345	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7449935	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7749947	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7750635	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7760877	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7763722	0.94[EUR][1000 genomes]
rs7764199	0.94[EUR][1000 genomes]
rs7772346	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7774946	0.92[EUR][1000 genomes]
rs9296117	0.96[EUR][1000 genomes]
rs9348946	0.95[EUR][1000 genomes]
rs9348948	0.95[EUR][1000 genomes]
rs9348951	0.92[EUR][1000 genomes]
rs9357183	0.92[EUR][1000 genomes]
rs9357184	0.81[EUR][1000 genomes]
rs9366859	0.95[EUR][1000 genomes]
rs9366861	0.92[EUR][1000 genomes]
rs9366868	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9366869	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9366872	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9368818	0.96[EUR][1000 genomes]
rs9368822	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368823	0.96[EUR][1000 genomes]
rs9368824	0.95[EUR][1000 genomes]
rs9368833	0.92[EUR][1000 genomes]
rs9380431	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380444	0.96[EUR][1000 genomes]
rs9380446	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9380464	0.89[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs9394211	0.96[EUR][1000 genomes]
rs9394234	0.96[EUR][1000 genomes]
rs9394236	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394237	0.95[EUR][1000 genomes]
rs9394239	0.92[EUR][1000 genomes]
rs9394242	0.92[EUR][1000 genomes]
rs9394243	0.92[EUR][1000 genomes]
rs9394244	0.92[EUR][1000 genomes]
rs9461985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9469793	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469816	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469826	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9637952	0.95[EUR][1000 genomes]
rs9637968	0.92[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11656800-11660000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:11657000-11660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11657000-11660200	Weak transcription	Right Atrium	heart
4	chr6:11657000-11682200	Weak transcription	HSMMtube	muscle
5	chr6:11657200-11660800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:11657200-11660800	Weak transcription	NHLF	lung
7	chr6:11657400-11660600	Strong transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links