Variant report

Variant	rs9380431
Chromosome Location	chr6:11657596-11657597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10485418	0.90[EUR][1000 genomes]
rs10807142	0.89[EUR][1000 genomes]
rs10947504	0.92[EUR][1000 genomes]
rs10947511	0.92[EUR][1000 genomes]
rs10947513	0.92[EUR][1000 genomes]
rs10947514	0.92[EUR][1000 genomes]
rs10947515	0.92[EUR][1000 genomes]
rs10947516	0.92[EUR][1000 genomes]
rs10947517	0.90[EUR][1000 genomes]
rs10947518	0.92[EUR][1000 genomes]
rs10947519	0.90[EUR][1000 genomes]
rs10947520	0.90[EUR][1000 genomes]
rs10947522	0.90[EUR][1000 genomes]
rs10947523	0.96[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs10947529	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1150586	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1150588	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1150589	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1150592	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11752668	0.90[EUR][1000 genomes]
rs11752767	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11752868	0.92[EUR][1000 genomes]
rs11753959	0.90[EUR][1000 genomes]
rs11754457	0.90[EUR][1000 genomes]
rs11755543	0.90[EUR][1000 genomes]
rs11758121	0.92[EUR][1000 genomes]
rs11758138	0.92[EUR][1000 genomes]
rs11759654	0.90[EUR][1000 genomes]
rs11964548	0.89[EUR][1000 genomes]
rs1206001	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1206002	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206007	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206008	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12173585	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12175829	0.92[EUR][1000 genomes]
rs12175836	0.92[EUR][1000 genomes]
rs12191630	0.90[EUR][1000 genomes]
rs12191903	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.89[EUR][1000 genomes]
rs12191906	0.90[EUR][1000 genomes]
rs12193984	0.90[EUR][1000 genomes]
rs12200077	0.89[EUR][1000 genomes]
rs12201911	0.90[EUR][1000 genomes]
rs12202334	0.93[EUR][1000 genomes]
rs12204642	0.89[EUR][1000 genomes]
rs12214396	0.90[EUR][1000 genomes]
rs12216511	0.90[EUR][1000 genomes]
rs12663442	0.89[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs1413347	0.93[EUR][1000 genomes]
rs1416451	0.92[EUR][1000 genomes]
rs1416452	0.93[EUR][1000 genomes]
rs1546863	0.90[EUR][1000 genomes]
rs2021340	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2022016	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs210922	0.85[EUR][1000 genomes]
rs2142892	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2142893	0.90[EUR][1000 genomes]
rs2142894	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2142895	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2179268	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2209259	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2224855	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2860114	0.93[EUR][1000 genomes]
rs3857564	0.96[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs4711397	0.92[EUR][1000 genomes]
rs4711398	0.92[EUR][1000 genomes]
rs4713818	0.91[EUR][1000 genomes]
rs4713819	0.92[EUR][1000 genomes]
rs4713821	0.92[EUR][1000 genomes]
rs4713822	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713826	0.90[EUR][1000 genomes]
rs62395208	0.89[EUR][1000 genomes]
rs6902790	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6907010	0.92[EUR][1000 genomes]
rs6907423	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914246	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917101	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917670	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6934072	0.92[EUR][1000 genomes]
rs6936345	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7449935	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7749947	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7750635	0.96[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs7760877	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7763722	0.95[EUR][1000 genomes]
rs7764199	0.95[EUR][1000 genomes]
rs7772346	0.96[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs7774946	0.89[EUR][1000 genomes]
rs9296117	0.93[EUR][1000 genomes]
rs9348946	0.92[EUR][1000 genomes]
rs9348948	0.92[EUR][1000 genomes]
rs9348951	0.90[EUR][1000 genomes]
rs9357183	0.90[EUR][1000 genomes]
rs9366859	0.92[EUR][1000 genomes]
rs9366861	0.90[EUR][1000 genomes]
rs9366868	0.96[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs9366869	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9366872	0.88[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs9368818	0.93[EUR][1000 genomes]
rs9368822	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368823	0.93[EUR][1000 genomes]
rs9368824	0.92[EUR][1000 genomes]
rs9368833	0.90[EUR][1000 genomes]
rs9380444	0.93[EUR][1000 genomes]
rs9380446	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380464	0.85[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9394211	0.93[EUR][1000 genomes]
rs9394234	0.93[EUR][1000 genomes]
rs9394236	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394237	0.92[EUR][1000 genomes]
rs9394239	0.90[EUR][1000 genomes]
rs9394242	0.90[EUR][1000 genomes]
rs9394243	0.90[EUR][1000 genomes]
rs9394244	0.90[EUR][1000 genomes]
rs9461985	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469793	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469816	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469826	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9637952	0.92[EUR][1000 genomes]
rs9637968	0.90[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11651400-11658000	Enhancers	HUVEC	blood vessel
2	chr6:11653800-11657600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:11656200-11657600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:11656200-11657600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:11656400-11657600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:11656600-11657600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:11656800-11660000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:11657000-11660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:11657000-11660200	Weak transcription	Right Atrium	heart
10	chr6:11657000-11682200	Weak transcription	HSMMtube	muscle
11	chr6:11657200-11660800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:11657200-11660800	Weak transcription	NHLF	lung
13	chr6:11657400-11657600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:11657400-11660600	Strong transcription	HSMM	muscle

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