Variant report

Variant	rs12189559
Chromosome Location	chr6:11646748-11646749
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1150575	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1150576	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1195534	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1195535	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12203489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210415	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213930	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2104337	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4713767	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4713768	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs501654	0.96[ASN][1000 genomes]
rs530313	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs821438	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs821439	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9348937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348938	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366851	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366852	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9368807	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368808	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380426	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394208	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11638400-11650000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:11639000-11647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11640800-11650600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:11644400-11646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:11645000-11647600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:11645600-11647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:11646000-11647000	Weak transcription	HSMMtube	muscle
8	chr6:11646000-11647200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:11646200-11647000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:11646200-11648800	Weak transcription	HSMM	muscle
11	chr6:11646600-11646800	Weak transcription	Aorta	Aorta
12	chr6:11646600-11647000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links