Variant report

Variant	rs11961762
Chromosome Location	chr6:134075928-134075929
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34151162	1.00[AMR][1000 genomes]
rs59330925	1.00[AMR][1000 genomes]
rs73546900	1.00[AMR][1000 genomes]
rs73548809	1.00[AMR][1000 genomes]
rs73548815	1.00[AMR][1000 genomes]
rs73548829	1.00[AMR][1000 genomes]
rs73548877	1.00[AMR][1000 genomes]
rs73548884	1.00[AMR][1000 genomes]
rs73548886	1.00[AMR][1000 genomes]
rs9483593	1.00[AMR][1000 genomes]
rs9493662	1.00[AMR][1000 genomes]
rs999659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
2	chr6:134070400-134077000	Weak transcription	NHLF	lung
3	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
5	chr6:134072400-134076200	Enhancers	Ovary	ovary
6	chr6:134072600-134079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:134072800-134079600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:134073000-134078200	Enhancers	Fetal Kidney	kidney
9	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:134073600-134076400	Weak transcription	Osteobl	bone
11	chr6:134073600-134077200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:134073600-134080000	Weak transcription	A549	lung
13	chr6:134073800-134076400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:134073800-134076400	Weak transcription	NHDF-Ad	bronchial
15	chr6:134074400-134077200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:134074600-134076800	Weak transcription	Fetal Stomach	stomach
17	chr6:134075200-134076800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:134075600-134076600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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