Variant report

Variant	rs9483593
Chromosome Location	chr6:133922238-133922239
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961762	1.00[AMR][1000 genomes]
rs34151162	1.00[AMR][1000 genomes]
rs59330925	1.00[AMR][1000 genomes]
rs73546900	1.00[AMR][1000 genomes]
rs73548809	1.00[AMR][1000 genomes]
rs73548815	1.00[AMR][1000 genomes]
rs73548829	1.00[AMR][1000 genomes]
rs73548877	1.00[AMR][1000 genomes]
rs73548884	1.00[AMR][1000 genomes]
rs73548886	1.00[AMR][1000 genomes]
rs9493662	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs999659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv437014	chr6:133919776-133924082	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133916000-133925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133917200-133925200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:133922000-133922800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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