Variant report

Variant	rs999659
Chromosome Location	chr6:134086119-134086120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961762	1.00[AMR][1000 genomes]
rs34151162	1.00[AMR][1000 genomes]
rs59330925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919247	0.88[AFR][1000 genomes]
rs73548829	1.00[AMR][1000 genomes]
rs73548877	1.00[AMR][1000 genomes]
rs73548884	1.00[AMR][1000 genomes]
rs73548886	1.00[AMR][1000 genomes]
rs9483593	1.00[AMR][1000 genomes]
rs9493662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:134081200-134086600	Enhancers	Osteobl	bone
3	chr6:134082600-134090000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:134082800-134088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:134083400-134086800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:134084000-134086200	Enhancers	Ovary	ovary
7	chr6:134084000-134086400	Enhancers	Adipose Nuclei	Adipose
8	chr6:134084200-134086200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:134084200-134086400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:134084400-134086200	Enhancers	Aorta	Aorta
11	chr6:134084400-134086400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:134084400-134086400	Enhancers	NHLF	lung
13	chr6:134084400-134086600	Enhancers	Fetal Lung	lung
14	chr6:134084400-134086800	Enhancers	HSMM	muscle
15	chr6:134084600-134086400	Enhancers	NH-A	brain
16	chr6:134085000-134086200	Enhancers	HSMMtube	muscle
17	chr6:134085400-134086200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:134085400-134086200	Enhancers	Fetal Stomach	stomach
19	chr6:134085400-134086200	Enhancers	A549	lung
20	chr6:134085400-134086400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:134085400-134086400	Enhancers	Fetal Kidney	kidney
22	chr6:134085600-134086200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:134085600-134086200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:134085600-134086400	Enhancers	Colon Smooth Muscle	Colon
25	chr6:134085800-134086200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:134085800-134086200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:134085800-134086400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:134085800-134086600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:134085800-134086600	Enhancers	NHDF-Ad	bronchial
30	chr6:134086000-134089800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:134086000-134089800	Weak transcription	HMEC	breast
32	chr6:134086000-134090200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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