Variant report

Variant	rs73548877
Chromosome Location	chr6:133913194-133913195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961762	1.00[AMR][1000 genomes]
rs34151162	1.00[AMR][1000 genomes]
rs59330925	1.00[AMR][1000 genomes]
rs73546900	1.00[AMR][1000 genomes]
rs73548809	1.00[AMR][1000 genomes]
rs73548815	1.00[AMR][1000 genomes]
rs73548829	1.00[AMR][1000 genomes]
rs73548884	1.00[AMR][1000 genomes]
rs73548886	1.00[AMR][1000 genomes]
rs9483593	1.00[AMR][1000 genomes]
rs9493662	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs999659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133910400-133913400	Weak transcription	Fetal Lung	lung
2	chr6:133911200-133914000	Enhancers	HMEC	breast
3	chr6:133911400-133913800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:133911400-133913800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:133911600-133913600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:133911600-133914000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:133912000-133913600	Enhancers	NHEK	skin
8	chr6:133912000-133913800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:133912000-133913800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:133912400-133913800	Weak transcription	Fetal Stomach	stomach
11	chr6:133912400-133915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:133912600-133913600	Enhancers	Osteobl	bone
14	chr6:133912600-133915400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:133912600-133916800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:133912800-133913200	Weak transcription	Hela-S3	cervix
17	chr6:133912800-133913800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:133912800-133915800	Weak transcription	NHDF-Ad	bronchial
19	chr6:133913000-133914800	Enhancers	A549	lung
20	chr6:133913000-133916800	Weak transcription	NHLF	lung

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