Variant report
| Variant | rs11965038 |
|---|---|
| Chromosome Location | chr6:132543584-132543585 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227220 | Chromatin interaction |
| ENSG00000118523 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11961735 | 0.94[AFR][1000 genomes] |
| rs11963966 | 0.88[AFR][1000 genomes] |
| rs11968965 | 0.93[AFR][1000 genomes] |
| rs56217636 | 1.00[AFR][1000 genomes] |
| rs57388595 | 1.00[AFR][1000 genomes] |
| rs57395154 | 0.87[AFR][1000 genomes] |
| rs59790539 | 1.00[AFR][1000 genomes] |
| rs60838140 | 0.88[AFR][1000 genomes] |
| rs73781465 | 1.00[AFR][1000 genomes] |
| rs73781466 | 0.86[AFR][1000 genomes] |
| rs73781470 | 1.00[AFR][1000 genomes] |
| rs73781480 | 1.00[AFR][1000 genomes] |
| rs73781488 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024527 | chr6:132532941-132571889 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
