Variant report

Variant	rs60838140
Chromosome Location	chr6:132564816-132564817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961735	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965038	0.88[AFR][1000 genomes]
rs11968965	0.82[AFR][1000 genomes]
rs56217636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57388595	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59790539	0.88[AFR][1000 genomes]
rs73781465	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781470	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781480	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781481	1.00[AMR][1000 genomes]
rs73781488	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132564200-132568200	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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