Variant report

Variant	rs73781480
Chromosome Location	chr6:132573752-132573753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11961735	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963966	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965038	1.00[AFR][1000 genomes]
rs11968965	0.93[AFR][1000 genomes]
rs56217636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57388595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57395154	0.87[AFR][1000 genomes]
rs59790539	1.00[AFR][1000 genomes]
rs60838140	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781466	0.86[AFR][1000 genomes]
rs73781470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781481	1.00[AMR][1000 genomes]
rs73781488	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132572200-132574000	Enhancers	HMEC	breast
3	chr6:132572600-132573800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:132573400-132573800	Enhancers	NHEK	skin
5	chr6:132573400-132575800	Enhancers	NHDF-Ad	bronchial
6	chr6:132573600-132575200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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