Variant report

Variant	rs56217636
Chromosome Location	chr6:132551984-132551985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11961735	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963966	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965038	1.00[AFR][1000 genomes]
rs11968965	0.93[AFR][1000 genomes]
rs57388595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57395154	0.87[AFR][1000 genomes]
rs59790539	1.00[AFR][1000 genomes]
rs60838140	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781466	0.86[AFR][1000 genomes]
rs73781470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781481	1.00[AMR][1000 genomes]
rs73781488	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132549200-132553000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:132549400-132556000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:132550800-132555600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:132550800-132557000	Weak transcription	NH-A	brain
5	chr6:132551000-132555600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132551400-132552000	Enhancers	HSMM	muscle
7	chr6:132551400-132552200	Enhancers	HSMMtube	muscle
8	chr6:132551600-132553800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:132551800-132552800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:132551800-132553000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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