Variant report

Variant	rs11966454
Chromosome Location	chr6:13145973-13145974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13134956..13137287-chr6:13143734..13146232,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10440826	1.00[AMR][1000 genomes]
rs11967029	1.00[AMR][1000 genomes]
rs34367742	1.00[AMR][1000 genomes]
rs34393712	1.00[AMR][1000 genomes]
rs56275338	1.00[AMR][1000 genomes]
rs7357013	1.00[AMR][1000 genomes]
rs73723398	1.00[AMR][1000 genomes]
rs73723401	1.00[AMR][1000 genomes]
rs7453683	1.00[AMR][1000 genomes]
rs9395425	1.00[AMR][1000 genomes]
rs9463366	1.00[AMR][1000 genomes]
rs9463368	1.00[AMR][1000 genomes]
rs9463382	1.00[AMR][1000 genomes]
rs9463409	1.00[AMR][1000 genomes]
rs9463422	1.00[AMR][1000 genomes]
rs9463445	1.00[AMR][1000 genomes]
rs9473055	1.00[AMR][1000 genomes]
rs9473057	1.00[AMR][1000 genomes]
rs9473110	1.00[AMR][1000 genomes]
rs9473169	1.00[AMR][1000 genomes]
rs9473206	1.00[AMR][1000 genomes]
rs9473293	1.00[AMR][1000 genomes]
rs9473351	1.00[AMR][1000 genomes]
rs9473352	1.00[AMR][1000 genomes]
rs9473417	1.00[AMR][1000 genomes]
rs9473483	1.00[AMR][1000 genomes]
rs9473484	1.00[AMR][1000 genomes]
rs9473487	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
2	chr6:13140400-13146000	Weak transcription	Brain Substantia Nigra	brain
3	chr6:13140400-13147800	Weak transcription	Fetal Kidney	kidney
4	chr6:13142400-13159400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:13144000-13149000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:13144600-13148800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:13144600-13149000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:13144600-13149200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:13144800-13149200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:13144800-13149400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:13145200-13146400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:13145400-13146400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:13145400-13148400	Enhancers	Brain Anterior Caudate	brain
14	chr6:13145600-13146000	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:13145600-13146000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:13145600-13146400	Enhancers	Pancreas	Pancrea
17	chr6:13145800-13146200	Enhancers	Right Ventricle	heart
18	chr6:13145800-13146200	Enhancers	Small Intestine	intestine
19	chr6:13145800-13146400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:13145800-13146400	Enhancers	Left Ventricle	heart
21	chr6:13145800-13147200	Enhancers	Fetal Heart	heart
22	chr6:13145800-13147400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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