Variant report

Variant	rs9463445
Chromosome Location	chr6:13099921-13099922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13097814..13100290-chr6:13115939..13117682,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10440826	1.00[AMR][1000 genomes]
rs11966454	1.00[AMR][1000 genomes]
rs11967029	1.00[AMR][1000 genomes]
rs34367742	1.00[AMR][1000 genomes]
rs56275338	1.00[AMR][1000 genomes]
rs7357013	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723398	1.00[AMR][1000 genomes]
rs73723401	1.00[AMR][1000 genomes]
rs7453683	1.00[AMR][1000 genomes]
rs9395425	1.00[AMR][1000 genomes]
rs9463366	1.00[AMR][1000 genomes]
rs9463368	1.00[AMR][1000 genomes]
rs9463382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9463409	1.00[AMR][1000 genomes]
rs9463422	1.00[AMR][1000 genomes]
rs9473055	1.00[AMR][1000 genomes]
rs9473057	1.00[AMR][1000 genomes]
rs9473110	1.00[AMR][1000 genomes]
rs9473169	1.00[AMR][1000 genomes]
rs9473206	1.00[AMR][1000 genomes]
rs9473293	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473351	1.00[AMR][1000 genomes]
rs9473352	1.00[AMR][1000 genomes]
rs9473417	1.00[AMR][1000 genomes]
rs9473483	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473487	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13078600-13101400	Weak transcription	Lung	lung
2	chr6:13080000-13102000	Weak transcription	Fetal Brain Female	brain
3	chr6:13080000-13105200	Weak transcription	Right Atrium	heart
4	chr6:13089000-13102000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:13096200-13101800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:13096200-13103200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:13096400-13102200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:13096800-13100400	Enhancers	Brain Anterior Caudate	brain
9	chr6:13097200-13106600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:13097600-13101200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:13098000-13101400	Weak transcription	Pancreas	Pancrea
12	chr6:13098000-13102000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:13098600-13102000	Weak transcription	Brain Substantia Nigra	brain
14	chr6:13099200-13114200	Weak transcription	Aorta	Aorta
15	chr6:13099400-13101400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:13099800-13101400	Weak transcription	Left Ventricle	heart
17	chr6:13099800-13101400	Weak transcription	Right Ventricle	heart
18	chr6:13099800-13102200	Weak transcription	Brain Angular Gyrus	brain
19	chr6:13099800-13103000	Weak transcription	Fetal Heart	heart
20	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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