Variant report

Variant	rs9473417
Chromosome Location	chr6:13074497-13074498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13073241..13075964-chr6:13078893..13081612,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10440826	1.00[AMR][1000 genomes]
rs11966454	1.00[AMR][1000 genomes]
rs11967029	1.00[AMR][1000 genomes]
rs34367742	1.00[AMR][1000 genomes]
rs56275338	1.00[AMR][1000 genomes]
rs7357013	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723398	1.00[AMR][1000 genomes]
rs73723401	1.00[AMR][1000 genomes]
rs7453683	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9395425	1.00[AMR][1000 genomes]
rs9463366	1.00[AMR][1000 genomes]
rs9463368	1.00[AMR][1000 genomes]
rs9463382	1.00[AMR][1000 genomes]
rs9463409	1.00[AMR][1000 genomes]
rs9463422	1.00[AMR][1000 genomes]
rs9463445	1.00[AMR][1000 genomes]
rs9473055	1.00[AMR][1000 genomes]
rs9473057	1.00[AMR][1000 genomes]
rs9473110	1.00[AMR][1000 genomes]
rs9473169	1.00[AMR][1000 genomes]
rs9473206	1.00[AMR][1000 genomes]
rs9473293	1.00[AMR][1000 genomes]
rs9473351	1.00[AMR][1000 genomes]
rs9473352	1.00[AMR][1000 genomes]
rs9473483	1.00[AMR][1000 genomes]
rs9473484	1.00[AMR][1000 genomes]
rs9473487	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13054800-13074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:13055200-13076400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:13059200-13077600	Weak transcription	Lung	lung
4	chr6:13067400-13075800	Weak transcription	Pancreas	Pancrea
5	chr6:13069800-13082200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:13070400-13077800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:13070800-13075400	Weak transcription	Left Ventricle	heart
8	chr6:13070800-13075600	Weak transcription	Right Ventricle	heart
9	chr6:13072200-13074600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:13072400-13074600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:13072600-13082200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:13073000-13075200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:13073200-13076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:13073400-13075400	Weak transcription	Brain Substantia Nigra	brain
15	chr6:13073400-13075600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:13073400-13075600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:13073400-13075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:13073400-13075800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:13073400-13076600	Weak transcription	Fetal Lung	lung
20	chr6:13073400-13078400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:13074000-13075400	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:13074000-13076400	Weak transcription	Aorta	Aorta
23	chr6:13074400-13074600	Enhancers	Brain Angular Gyrus	brain
24	chr6:13074400-13076600	Enhancers	Fetal Heart	heart

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