Variant report

Variant	rs9463382
Chromosome Location	chr6:13046800-13046801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10440826	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966454	1.00[AMR][1000 genomes]
rs11967029	1.00[AMR][1000 genomes]
rs34367742	1.00[AMR][1000 genomes]
rs56275338	1.00[AMR][1000 genomes]
rs7357013	1.00[AMR][1000 genomes]
rs73723398	1.00[AMR][1000 genomes]
rs73723401	1.00[AMR][1000 genomes]
rs7453683	1.00[AMR][1000 genomes]
rs9395425	1.00[AMR][1000 genomes]
rs9463366	1.00[AMR][1000 genomes]
rs9463368	1.00[AMR][1000 genomes]
rs9463409	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9463422	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9463445	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473055	1.00[AMR][1000 genomes]
rs9473057	1.00[AMR][1000 genomes]
rs9473110	1.00[AMR][1000 genomes]
rs9473169	1.00[AMR][1000 genomes]
rs9473206	1.00[AMR][1000 genomes]
rs9473258	0.81[AFR][1000 genomes]
rs9473293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473351	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473352	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473417	1.00[AMR][1000 genomes]
rs9473483	1.00[AMR][1000 genomes]
rs9473484	1.00[AMR][1000 genomes]
rs9473487	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13029800-13056400	Weak transcription	Pancreas	Pancrea
2	chr6:13030000-13056400	Weak transcription	Brain Germinal Matrix	brain
3	chr6:13038200-13047800	Weak transcription	Aorta	Aorta
4	chr6:13038200-13053400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:13039400-13054800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:13039400-13071600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:13040000-13058000	Weak transcription	Fetal Brain Male	brain
8	chr6:13040600-13048200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:13044400-13046800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:13044400-13046800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:13044600-13046800	Enhancers	Left Ventricle	heart
12	chr6:13044600-13046800	Enhancers	Spleen	Spleen
13	chr6:13044600-13047200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:13045000-13053000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:13045200-13048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:13045200-13050000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:13045200-13053400	Weak transcription	Brain Anterior Caudate	brain
18	chr6:13045400-13046800	Enhancers	Fetal Heart	heart
19	chr6:13045600-13046800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:13045600-13047000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:13046000-13046800	Enhancers	Esophagus	oesophagus
22	chr6:13046200-13048000	Weak transcription	Right Ventricle	heart
23	chr6:13046400-13046800	Enhancers	K562	blood
24	chr6:13046400-13053000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:13046600-13047200	Enhancers	Colon Smooth Muscle	Colon
26	chr6:13046600-13047800	Weak transcription	NHDF-Ad	bronchial
27	chr6:13046600-13048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:13046600-13048000	Weak transcription	NHEK	skin
29	chr6:13046600-13052200	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:13046800-13047800	Weak transcription	Fetal Heart	heart
31	chr6:13046800-13047800	Weak transcription	Left Ventricle	heart
32	chr6:13046800-13048200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:13046800-13048400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:13046800-13048400	Weak transcription	Esophagus	oesophagus
35	chr6:13046800-13048400	Weak transcription	K562	blood
36	chr6:13046800-13050000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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