Variant report

Variant	rs11967507
Chromosome Location	chr6:128370423-128370424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128362930..128365484-chr6:128368560..128370792,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10046118	1.00[ASN][1000 genomes]
rs10046119	1.00[ASN][1000 genomes]
rs10046162	0.81[ASN][1000 genomes]
rs10499136	0.81[ASN][1000 genomes]
rs11962156	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11962619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963140	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11967205	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13217988	1.00[ASN][1000 genomes]
rs17055235	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883810	0.94[ASN][1000 genomes]
rs2326672	0.97[ASN][1000 genomes]
rs28874136	0.81[ASN][1000 genomes]
rs4265047	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4327718	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4336462	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4339480	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4421216	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4475344	0.89[ASN][1000 genomes]
rs4496822	0.83[ASN][1000 genomes]
rs4498384	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4895828	0.81[ASN][1000 genomes]
rs4897241	0.92[ASN][1000 genomes]
rs4897242	0.92[ASN][1000 genomes]
rs58544367	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58766015	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60702670	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912749	0.94[ASN][1000 genomes]
rs6913095	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6928445	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6928496	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6928512	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71565676	0.97[ASN][1000 genomes]
rs7341312	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73582696	1.00[ASN][1000 genomes]
rs73773990	0.89[ASN][1000 genomes]
rs73773992	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7752113	0.92[ASN][1000 genomes]
rs7757761	0.92[ASN][1000 genomes]
rs7758689	0.92[ASN][1000 genomes]
rs9321106	0.97[ASN][1000 genomes]
rs9321107	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9321110	0.92[ASN][1000 genomes]
rs9375546	0.92[ASN][1000 genomes]
rs9388616	1.00[ASN][1000 genomes]
rs9402016	0.92[ASN][1000 genomes]
rs9482856	0.89[ASN][1000 genomes]
rs9482859	1.00[ASN][1000 genomes]
rs9482861	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482862	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482864	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482865	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482866	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482867	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482868	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9482869	1.00[ASN][1000 genomes]
rs9482872	0.92[ASN][1000 genomes]
rs9491904	1.00[ASN][1000 genomes]
rs9491905	1.00[ASN][1000 genomes]
rs9491906	1.00[ASN][1000 genomes]
rs9491909	0.81[ASN][1000 genomes]
rs970363	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
3	chr6:128307800-128370800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:128311600-128387200	Weak transcription	NH-A	brain
5	chr6:128311800-128378400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:128320800-128388200	Weak transcription	NHEK	skin
7	chr6:128326600-128388200	Weak transcription	HMEC	breast
8	chr6:128337400-128378400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:128341200-128374400	Weak transcription	HSMMtube	muscle
10	chr6:128342200-128371000	Weak transcription	Liver	Liver
11	chr6:128342600-128388600	Weak transcription	Fetal Brain Female	brain
12	chr6:128347000-128374400	Weak transcription	Esophagus	oesophagus
13	chr6:128347000-128405200	Weak transcription	Lung	lung
14	chr6:128350000-128401000	Weak transcription	Small Intestine	intestine
15	chr6:128350400-128374200	Weak transcription	Gastric	stomach
16	chr6:128350600-128374200	Weak transcription	Fetal Stomach	stomach
17	chr6:128351400-128378600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:128351400-128385000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:128351600-128371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:128351600-128375000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:128352400-128378400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:128353200-128388400	Weak transcription	NHLF	lung
23	chr6:128353400-128374400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:128353400-128378600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:128353400-128378600	Weak transcription	Osteobl	bone
26	chr6:128353600-128371000	Weak transcription	HepG2	liver
27	chr6:128353600-128374400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:128353600-128374400	Weak transcription	Aorta	Aorta
29	chr6:128353600-128378400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:128353600-128378600	Weak transcription	Left Ventricle	heart
31	chr6:128354000-128378400	Weak transcription	Primary B cells from cord blood	blood
32	chr6:128354200-128384800	Weak transcription	Fetal Lung	lung
33	chr6:128355600-128385400	Weak transcription	Primary T cells from cord blood	blood
34	chr6:128358400-128371000	Weak transcription	Fetal Intestine Small	intestine
35	chr6:128359600-128378600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:128361200-128388000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:128361800-128378400	Weak transcription	Fetal Thymus	thymus
38	chr6:128362000-128385200	Weak transcription	Brain Angular Gyrus	brain
39	chr6:128362000-128385200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:128363200-128378000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:128363800-128378400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:128365600-128370600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:128367600-128384400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:128367600-128398000	Weak transcription	HUVEC	blood vessel
45	chr6:128368000-128371800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:128368200-128385000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:128368400-128388000	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:128369200-128371400	Strong transcription	Fetal Intestine Large	intestine
49	chr6:128369400-128378600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:128369800-128388000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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