The 2.0 version of rSNPBase

Variant report

Variant rs9388616
Chromosome Location chr6:128369580-128369581
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:128289000-128431000 Weak transcription Psoas Muscle Psoas
2 chr6:128293600-128374400 Weak transcription Pancreas Pancrea
3 chr6:128307800-128370800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr6:128311600-128387200 Weak transcription NH-A brain
5 chr6:128311800-128378400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr6:128320800-128388200 Weak transcription NHEK skin
7 chr6:128326600-128388200 Weak transcription HMEC breast
8 chr6:128337400-128378400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr6:128341200-128374400 Weak transcription HSMMtube muscle
10 chr6:128342200-128371000 Weak transcription Liver Liver
11 chr6:128342600-128388600 Weak transcription Fetal Brain Female brain
12 chr6:128347000-128374400 Weak transcription Esophagus oesophagus
13 chr6:128347000-128405200 Weak transcription Lung lung
14 chr6:128350000-128370000 Weak transcription Placenta Placenta
15 chr6:128350000-128401000 Weak transcription Small Intestine intestine
16 chr6:128350400-128374200 Weak transcription Gastric stomach
17 chr6:128350600-128374200 Weak transcription Fetal Stomach stomach
18 chr6:128351400-128378600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr6:128351400-128385000 Weak transcription Brain Inferior Temporal Lobe brain
20 chr6:128351600-128371000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr6:128351600-128375000 Weak transcription Brain Anterior Caudate brain
22 chr6:128352400-128378400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr6:128353200-128388400 Weak transcription NHLF lung
24 chr6:128353400-128374400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr6:128353400-128378600 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr6:128353400-128378600 Weak transcription Osteobl bone
27 chr6:128353600-128370000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr6:128353600-128371000 Weak transcription HepG2 liver
29 chr6:128353600-128374400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr6:128353600-128374400 Weak transcription Aorta Aorta
31 chr6:128353600-128378400 Weak transcription Duodenum Mucosa Duodenum
32 chr6:128353600-128378600 Weak transcription Left Ventricle heart
33 chr6:128354000-128378400 Weak transcription Primary B cells from cord blood blood
34 chr6:128354200-128384800 Weak transcription Fetal Lung lung
35 chr6:128355600-128385400 Weak transcription Primary T cells from cord blood blood
36 chr6:128358400-128371000 Weak transcription Fetal Intestine Small intestine
37 chr6:128359600-128378600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr6:128361200-128388000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr6:128361800-128378400 Weak transcription Fetal Thymus thymus
40 chr6:128362000-128385200 Weak transcription Brain Angular Gyrus brain
41 chr6:128362000-128385200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr6:128363200-128378000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr6:128363800-128378400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr6:128365600-128370600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr6:128367600-128384400 Weak transcription Brain Cingulate Gyrus brain
46 chr6:128367600-128398000 Weak transcription HUVEC blood vessel
47 chr6:128368000-128371800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr6:128368200-128385000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr6:128368400-128388000 Weak transcription Fetal Muscle Leg muscle
50 chr6:128369200-128369800 Enhancers H9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015