Variant report

Variant	rs9491904
Chromosome Location	chr6:128356095-128356096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10046118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10046119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10046162	0.81[ASN][1000 genomes]
rs10499136	0.81[ASN][1000 genomes]
rs11962156	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962619	1.00[ASN][1000 genomes]
rs11963140	1.00[ASN][1000 genomes]
rs11967205	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs11967507	1.00[ASN][1000 genomes]
rs13217988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055223	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17055231	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17055235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1883810	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2326672	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28874136	0.81[ASN][1000 genomes]
rs35335036	0.82[EUR][1000 genomes]
rs4265047	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327718	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336462	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4339480	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421216	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475344	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4496822	0.83[ASN][1000 genomes]
rs4498384	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598101	0.89[CEU][hapmap]
rs4895828	0.81[ASN][1000 genomes]
rs4895829	0.89[CEU][hapmap]
rs4897239	0.90[CEU][hapmap]
rs4897240	0.90[CEU][hapmap]
rs4897241	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4897242	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4897243	0.89[CEU][hapmap]
rs58544367	0.97[ASN][1000 genomes]
rs58766015	1.00[ASN][1000 genomes]
rs60702670	1.00[ASN][1000 genomes]
rs6569520	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6569521	0.89[CEU][hapmap]
rs6569522	0.90[CEU][hapmap]
rs6569523	0.89[CEU][hapmap]
rs6912749	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6913095	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913595	0.80[EUR][1000 genomes]
rs6928445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938574	0.90[CEU][hapmap]
rs71565676	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341312	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs73582696	1.00[ASN][1000 genomes]
rs73773990	0.89[ASN][1000 genomes]
rs73773992	0.89[ASN][1000 genomes]
rs7752113	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7756639	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7757761	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7758689	0.82[CHB][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7769691	0.89[CEU][hapmap]
rs7774703	0.90[CEU][hapmap]
rs9321106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321108	0.90[CEU][hapmap]
rs9321109	0.89[CEU][hapmap]
rs9321110	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9375546	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9388616	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402016	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9482856	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9482857	0.81[AMR][1000 genomes]
rs9482858	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9482859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482860	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9482861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482863	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9482864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482867	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482869	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482871	0.90[CEU][hapmap]
rs9482872	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9491905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491909	0.81[ASN][1000 genomes]
rs970363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970364	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
3	chr6:128307800-128370800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:128311600-128387200	Weak transcription	NH-A	brain
5	chr6:128311800-128378400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:128314000-128367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:128320800-128357800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:128320800-128388200	Weak transcription	NHEK	skin
9	chr6:128326600-128356600	Weak transcription	HSMM	muscle
10	chr6:128326600-128388200	Weak transcription	HMEC	breast
11	chr6:128337400-128378400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:128341200-128374400	Weak transcription	HSMMtube	muscle
13	chr6:128342200-128371000	Weak transcription	Liver	Liver
14	chr6:128342600-128388600	Weak transcription	Fetal Brain Female	brain
15	chr6:128344600-128369200	Weak transcription	Ovary	ovary
16	chr6:128347000-128374400	Weak transcription	Esophagus	oesophagus
17	chr6:128347000-128405200	Weak transcription	Lung	lung
18	chr6:128350000-128370000	Weak transcription	Placenta	Placenta
19	chr6:128350000-128401000	Weak transcription	Small Intestine	intestine
20	chr6:128350400-128374200	Weak transcription	Gastric	stomach
21	chr6:128350600-128374200	Weak transcription	Fetal Stomach	stomach
22	chr6:128350800-128360200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:128351400-128378600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:128351400-128385000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:128351600-128371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:128351600-128375000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:128351800-128361400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:128352400-128378400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:128353000-128357200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:128353200-128388400	Weak transcription	NHLF	lung
31	chr6:128353400-128374400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:128353400-128378600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:128353400-128378600	Weak transcription	Osteobl	bone
34	chr6:128353600-128357200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:128353600-128358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:128353600-128359600	Weak transcription	Fetal Heart	heart
37	chr6:128353600-128369200	Weak transcription	Fetal Intestine Large	intestine
38	chr6:128353600-128370000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:128353600-128371000	Weak transcription	HepG2	liver
40	chr6:128353600-128374400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:128353600-128374400	Weak transcription	Aorta	Aorta
42	chr6:128353600-128378400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr6:128353600-128378600	Weak transcription	Left Ventricle	heart
44	chr6:128354000-128378400	Weak transcription	Primary B cells from cord blood	blood
45	chr6:128354200-128384800	Weak transcription	Fetal Lung	lung
46	chr6:128355200-128360800	Weak transcription	Fetal Thymus	thymus
47	chr6:128355400-128360800	Weak transcription	Thymus	Thymus
48	chr6:128355600-128356800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:128355600-128385400	Weak transcription	Primary T cells from cord blood	blood

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