Variant report

Variant	rs11967864
Chromosome Location	chr6:24240087-24240088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11962511	0.92[AMR][1000 genomes]
rs11969180	1.00[MEX][hapmap]
rs58980028	0.92[AMR][1000 genomes]
rs60218657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922164	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73391965	0.92[AMR][1000 genomes]
rs73391986	1.00[AMR][1000 genomes]
rs73394017	1.00[AMR][1000 genomes]
rs73394024	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394028	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394043	0.92[AMR][1000 genomes]
rs73394056	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73394076	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
3	chr6:24230200-24242400	Weak transcription	Pancreas	Pancrea
4	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24235000-24240800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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