Variant report

Variant	rs73391986
Chromosome Location	chr6:24206886-24206887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:24206886-24206936	SK-N-SH	brain:	n/a
2	chr6:24206886-24206936	HRPEpiC	eye:	n/a
3	chr6:24206886-24206936	HEEpiC	esophagus:	n/a
4	chr6:24206886-24206936	NB4	blood:	n/a
5	chr6:24206886-24206936	HRE	kidney:	n/a
6	chr6:24206886-24206936	HPAEpiC	pulmonary alveolar:	n/a
7	chr6:24206886-24206936	MCF-7	breast:	n/a
8	chr6:24206886-24206936	NHDF-neo	bronchial:	n/a
9	chr6:24206886-24206936	HUVEC	blood vessel:	n/a
10	chr6:24206886-24206936	ProgFib	skin:	n/a
11	chr6:24206886-24206936	AoSMC	blood vessel:	n/a
12	chr6:24206886-24206936	HepG2	liver:	n/a
13	chr6:24206886-24206936	NH-A	brain:	n/a
14	chr6:24206886-24206936	PANC-1	pancreas:	n/a
15	chr6:24206886-24206936	HIPEpiC	eye:	n/a
16	chr6:24206886-24206936	HEK293	kidney:	embryo
17	chr6:24206886-24206936	CMK	blood:	n/a
18	chr6:24206886-24206936	A549	lung:	n/a
19	chr6:24206886-24206936	HL-60	blood:	n/a
20	chr6:24206886-24206936	MCF10A-Er-Src	breast:	n/a
21	chr6:24206886-24206936	Hela-S3	cervix:	n/a
22	chr6:24206886-24206936	U87	brain:	n/a
23	chr6:24206886-24206936	Jurkat	blood:	n/a
24	chr6:24206886-24206936	AG04449	skin:	fetal
25	chr6:24206886-24206936	ECC-1	luminal epithelium:	n/a
26	chr6:24206886-24206936	AG04450	lung:	fetal
27	chr6:24206886-24206936	AG09319	gingival:	n/a
28	chr6:24206886-24206936	T-47D	breast:	n/a
29	chr6:24206886-24206936	HCPEpiC	choroid plexus:	n/a
30	chr6:24206886-24206936	PrEC	prostate:	n/a
31	chr6:24206886-24206936	LNCaP	prostate:	n/a
32	chr6:24206886-24206936	SK-N-SH_RA	brain:	n/a
33	chr6:24206886-24206936	SAEC	small airway:	n/a
34	chr6:24206886-24206936	NHBE	bronchial:	n/a
35	chr6:24206886-24206936	Caco-2	colon:	n/a
36	chr6:24206886-24206936	AG09309	skin:	n/a
37	chr6:24206886-24206936	BJ	skin:	n/a
38	chr6:24206886-24206936	HCF	heart:	n/a
39	chr6:24206886-24206936	PFSK-1	brain:	n/a
40	chr6:24206886-24206936	ovcar-3	ovarian:	n/a
41	chr6:24206886-24206936	Hepatocyte	liver:	n/a
42	chr6:24206886-24206936	HMEC	breast:	n/a
43	chr6:24206886-24206936	GM19239	blood:	n/a
44	chr6:24206886-24206936	HRCEpiC	kidney:	n/a
45	chr6:24206886-24206936	IMR90	lung:	fetal
46	chr6:24206886-24206936	GM06990	blood:	n/a
47	chr6:24206886-24206936	HAEpiC	amniotic membrane:	n/a
48	chr6:24206886-24206936	HCM	heart:	n/a
49	chr6:24206886-24206936	AG10803	skin:	n/a
50	chr6:24206886-24206936	K562	blood:	n/a

No data

Variant related genes	Relation type
DCDC2	CpG island

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11962511	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967864	1.00[AMR][1000 genomes]
rs58980028	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60218657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6922164	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391965	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391997	1.00[EUR][1000 genomes]
rs73394017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394043	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394044	1.00[EUR][1000 genomes]
rs73394056	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394076	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24204600-24207000	Genic enhancers	HepG2	liver
3	chr6:24205600-24207000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24206800-24207600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney

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