Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11962511	1.00[EUR][1000 genomes]
rs11967864	0.83[AMR][1000 genomes]
rs57212724	0.83[AMR][1000 genomes]
rs57694040	0.83[AMR][1000 genomes]
rs58380979	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58980028	1.00[EUR][1000 genomes]
rs60218657	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61302362	0.83[AMR][1000 genomes]
rs6922164	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391965	1.00[EUR][1000 genomes]
rs73391986	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391997	1.00[EUR][1000 genomes]
rs73394017	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394024	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394027	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394028	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394037	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394043	1.00[EUR][1000 genomes]
rs73394044	1.00[EUR][1000 genomes]
rs73394056	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396009	0.83[AMR][1000 genomes]
rs73396023	0.83[AMR][1000 genomes]
rs73396027	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24263000-24283000	Weak transcription	Fetal Intestine Large	intestine
2	chr6:24263400-24273800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24270200-24271800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:24270200-24274800	Strong transcription	HepG2	liver
5	chr6:24270400-24283800	Weak transcription	Pancreas	Pancrea
6	chr6:24271000-24273200	Weak transcription	Fetal Kidney	kidney
7	chr6:24271200-24283400	Weak transcription	Fetal Intestine Small	intestine

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