Variant report

Variant	rs6922164
Chromosome Location	chr6:24260505-24260506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11962511	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967864	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs58380979	0.84[AMR][1000 genomes]
rs58980028	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60218657	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391965	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391986	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391997	1.00[EUR][1000 genomes]
rs73394017	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394024	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394027	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394028	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394037	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394043	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394044	1.00[EUR][1000 genomes]
rs73394056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394076	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
3	chr6:24252400-24261600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:24258000-24261600	Weak transcription	HepG2	liver
5	chr6:24259800-24263000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:24260400-24260600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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