Variant report

Variant	rs11970041
Chromosome Location	chr6:144691698-144691699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12110410	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12110413	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12178630	0.91[AMR][1000 genomes]
rs17073670	0.91[AMR][1000 genomes]
rs2223428	0.83[YRI][hapmap];0.91[AMR][1000 genomes]
rs2328570	0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs28737224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4546509	0.80[AFR][1000 genomes]
rs57580585	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6570620	0.91[AMR][1000 genomes]
rs6570621	0.91[AMR][1000 genomes]
rs6902637	0.83[AMR][1000 genomes]
rs6929328	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6932679	0.91[AMR][1000 genomes]
rs9321971	0.91[AMR][1000 genomes]
rs9484866	0.91[AMR][1000 genomes]
rs9484868	0.84[YRI][hapmap];0.91[AMR][1000 genomes]
rs9484869	0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484871	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9496929	0.91[AMR][1000 genomes]
rs9496933	0.91[AMR][1000 genomes]
rs9496934	0.80[YRI][hapmap];0.91[AMR][1000 genomes]
rs9496939	0.91[AMR][1000 genomes]
rs9496940	0.91[AMR][1000 genomes]
rs9496941	0.91[AMR][1000 genomes]
rs9496942	0.91[AMR][1000 genomes]
rs9496946	0.91[AMR][1000 genomes]
rs9496947	1.00[AMR][1000 genomes]
rs9496959	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:144671200-144692000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:144673400-144699600	Weak transcription	Fetal Stomach	stomach
4	chr6:144675600-144692000	Weak transcription	Dnd41	blood
5	chr6:144681800-144699600	Weak transcription	Esophagus	oesophagus
6	chr6:144682000-144693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:144682000-144698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:144682600-144696600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:144683600-144699600	Weak transcription	Ovary	ovary
10	chr6:144683800-144704600	Weak transcription	Aorta	Aorta
11	chr6:144684000-144691800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:144684000-144693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:144684000-144698200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:144684000-144698200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:144684600-144696400	Weak transcription	Fetal Kidney	kidney
16	chr6:144684800-144699200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:144685000-144693200	Weak transcription	Small Intestine	intestine
18	chr6:144686200-144692000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:144686200-144695800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:144686200-144696200	Weak transcription	Fetal Heart	heart
21	chr6:144686200-144696800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:144686200-144696800	Weak transcription	Pancreas	Pancrea
23	chr6:144686200-144696800	Weak transcription	Psoas Muscle	Psoas
24	chr6:144686200-144696800	Weak transcription	Spleen	Spleen
25	chr6:144686400-144693000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:144686400-144698200	Weak transcription	HSMM	muscle
27	chr6:144686600-144694400	Weak transcription	NHDF-Ad	bronchial
28	chr6:144686600-144696600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:144686600-144699600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:144686600-144700800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:144686800-144692800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:144686800-144696400	Weak transcription	HUVEC	blood vessel
33	chr6:144687000-144691800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:144687000-144693800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr6:144687000-144698000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:144688000-144698400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:144688000-144698600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:144688200-144693800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:144688200-144696600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:144688200-144698600	Weak transcription	Adipose Nuclei	Adipose
41	chr6:144689000-144691800	Weak transcription	HepG2	liver
42	chr6:144689400-144692200	Strong transcription	Primary T cells from cord blood	blood
43	chr6:144689600-144694400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:144689800-144692000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:144690200-144692400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:144690400-144692200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:144690600-144692200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:144690600-144692200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:144690800-144695600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr6:144690800-144712800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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