Variant report

Variant	rs6929328
Chromosome Location	chr6:144696870-144696871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11965745	0.80[AFR][1000 genomes]
rs11970041	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12110410	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110413	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28737224	0.85[AMR][1000 genomes]
rs57580585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484869	0.85[AMR][1000 genomes]
rs9484870	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9484871	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484873	0.83[YRI][hapmap]
rs9496947	0.85[AMR][1000 genomes]
rs9496951	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs9496953	0.83[YRI][hapmap]
rs9496957	0.84[YRI][hapmap]
rs9496959	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144673400-144699600	Weak transcription	Fetal Stomach	stomach
2	chr6:144681800-144699600	Weak transcription	Esophagus	oesophagus
3	chr6:144682000-144698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:144683600-144699600	Weak transcription	Ovary	ovary
5	chr6:144683800-144704600	Weak transcription	Aorta	Aorta
6	chr6:144684000-144698200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:144684000-144698200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:144684800-144699200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:144686400-144698200	Weak transcription	HSMM	muscle
10	chr6:144686600-144699600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:144686600-144700800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:144687000-144698000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:144688000-144698400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:144688000-144698600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:144688200-144698600	Weak transcription	Adipose Nuclei	Adipose
16	chr6:144690800-144712800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:144691600-144713800	Weak transcription	Thymus	Thymus
18	chr6:144692200-144697000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:144692200-144698200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:144692200-144698200	Weak transcription	Primary T cells from cord blood	blood
21	chr6:144692200-144698200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:144692200-144698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:144692200-144698600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:144692200-144698600	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:144692200-144701600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:144692400-144702000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:144692400-144702200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:144693200-144699800	Weak transcription	GM12878-XiMat	blood
29	chr6:144693600-144698400	Weak transcription	NHLF	lung
30	chr6:144694200-144698400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:144694600-144698600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:144694800-144698400	Weak transcription	Fetal Thymus	thymus
33	chr6:144694800-144698400	Weak transcription	NHDF-Ad	bronchial
34	chr6:144694800-144698600	Weak transcription	HMEC	breast
35	chr6:144694800-144699400	Weak transcription	NHEK	skin
36	chr6:144695000-144700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:144695200-144698400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:144695600-144697400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:144695600-144698800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr6:144695600-144699800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:144695800-144697200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:144696000-144699000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr6:144696200-144697000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:144696200-144697000	Genic enhancers	HepG2	liver
45	chr6:144696200-144697200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:144696200-144697200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr6:144696200-144697200	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr6:144696200-144697200	Enhancers	Fetal Heart	heart
49	chr6:144696200-144697200	Enhancers	A549	lung
50	chr6:144696200-144697400	Genic enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links