Variant report

Variant	rs9484869
Chromosome Location	chr6:144683405-144683406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144682093..144683894-chr6:144723958..144726060,2	MCF-7	breast:
2	chr6:144681801..144683494-chr6:144686425..144688154,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11970041	0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110410	0.85[AMR][1000 genomes]
rs12110413	0.85[AMR][1000 genomes]
rs12178630	0.91[AMR][1000 genomes]
rs17073670	0.84[YRI][hapmap];0.91[AMR][1000 genomes]
rs2223428	1.00[MEX][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs2328570	0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs28737224	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580585	0.85[AMR][1000 genomes]
rs6570620	1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs6570621	0.91[AMR][1000 genomes]
rs6570631	1.00[MEX][hapmap]
rs6902637	0.83[AMR][1000 genomes]
rs6929328	0.85[AMR][1000 genomes]
rs6932679	1.00[MEX][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes]
rs7768531	0.84[YRI][hapmap]
rs9321971	0.91[AMR][1000 genomes]
rs9484865	1.00[MEX][hapmap]
rs9484866	0.91[AMR][1000 genomes]
rs9484868	0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs9484870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484871	0.85[AMR][1000 genomes]
rs9496929	0.91[AMR][1000 genomes]
rs9496933	0.91[AMR][1000 genomes]
rs9496934	0.91[AMR][1000 genomes]
rs9496939	0.91[AMR][1000 genomes]
rs9496940	0.91[AMR][1000 genomes]
rs9496941	0.91[AMR][1000 genomes]
rs9496942	0.91[AMR][1000 genomes]
rs9496946	0.91[AMR][1000 genomes]
rs9496947	1.00[AMR][1000 genomes]
rs9496959	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:144670800-144691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:144671200-144692000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:144671800-144685200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:144673400-144699600	Weak transcription	Fetal Stomach	stomach
8	chr6:144675400-144685600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:144675600-144692000	Weak transcription	Dnd41	blood
10	chr6:144675800-144684000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:144675800-144687000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:144676000-144685800	Weak transcription	Thymus	Thymus
13	chr6:144676000-144688200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:144676600-144685200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:144679000-144685400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:144681200-144684000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:144681400-144684000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:144681400-144684000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:144681600-144683800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:144681600-144683800	Enhancers	Right Atrium	heart
21	chr6:144681600-144683800	Enhancers	HSMMtube	muscle
22	chr6:144681600-144684000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:144681600-144684600	Genic enhancers	HepG2	liver
24	chr6:144681600-144685600	Enhancers	Adipose Nuclei	Adipose
25	chr6:144681600-144686600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:144681800-144683600	Weak transcription	NHEK	skin
27	chr6:144681800-144684000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:144681800-144685800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:144681800-144699600	Weak transcription	Esophagus	oesophagus
30	chr6:144682000-144685200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:144682000-144685800	Weak transcription	Placenta	Placenta
32	chr6:144682000-144685800	Weak transcription	Fetal Thymus	thymus
33	chr6:144682000-144691200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:144682000-144693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:144682000-144698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:144682200-144684800	Weak transcription	Primary T cells from cord blood	blood
37	chr6:144682200-144686200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:144682400-144685000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:144682400-144686000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:144682400-144686600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:144682600-144683600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:144682600-144683600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:144682600-144683600	Enhancers	Spleen	Spleen
44	chr6:144682600-144683800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:144682600-144684000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:144682600-144685600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:144682600-144685800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:144682600-144696600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:144682800-144683600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr6:144682800-144683600	Enhancers	Fetal Muscle Leg	muscle

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