Variant report

Variant	rs6570631
Chromosome Location	chr6:144766077-144766078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144761784..144763627-chr6:144765139..144766883,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2223428	1.00[MEX][hapmap]
rs36000065	1.00[EUR][1000 genomes]
rs4364502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57126147	1.00[EUR][1000 genomes]
rs57360253	1.00[EUR][1000 genomes]
rs57902986	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58152229	1.00[EUR][1000 genomes]
rs60896767	1.00[EUR][1000 genomes]
rs61620395	1.00[EUR][1000 genomes]
rs6570620	1.00[MEX][hapmap]
rs6570629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929203	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932679	1.00[MEX][hapmap]
rs73597078	1.00[EUR][1000 genomes]
rs73597094	1.00[EUR][1000 genomes]
rs73598970	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598995	1.00[EUR][1000 genomes]
rs7740206	1.00[EUR][1000 genomes]
rs7747024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484865	1.00[MEX][hapmap]
rs9484869	1.00[MEX][hapmap]
rs9496969	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:144743000-144780200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr6:144753000-144771200	Weak transcription	Stomach Mucosa	stomach
5	chr6:144755400-144770400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:144755400-144781200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:144755600-144780800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
9	chr6:144756800-144766400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:144756800-144772600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:144756800-144777200	Strong transcription	HSMM	muscle
12	chr6:144756800-144780200	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:144757000-144771000	Strong transcription	Adipose Nuclei	Adipose
14	chr6:144757400-144773800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:144757600-144767600	Strong transcription	HUVEC	blood vessel
16	chr6:144757800-144767200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:144758200-144770800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:144760200-144768400	Weak transcription	HMEC	breast
19	chr6:144761200-144766200	Weak transcription	Fetal Brain Male	brain
20	chr6:144762200-144767200	Weak transcription	HSMMtube	muscle
21	chr6:144762200-144780400	Weak transcription	Psoas Muscle	Psoas
22	chr6:144762800-144771200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:144762800-144780000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:144762800-144788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:144762800-144790800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:144762800-144791400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:144763000-144780000	Weak transcription	Brain Substantia Nigra	brain
28	chr6:144763000-144790800	Strong transcription	Primary B cells from cord blood	blood
29	chr6:144763000-144813800	Weak transcription	Brain Anterior Caudate	brain
30	chr6:144763200-144766600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:144763200-144768000	Weak transcription	NHLF	lung
32	chr6:144763200-144768200	Weak transcription	NH-A	brain
33	chr6:144763200-144769200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:144763200-144769400	Weak transcription	Colonic Mucosa	Colon
35	chr6:144763200-144769400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:144763200-144769400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:144763200-144770200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:144763200-144770400	Weak transcription	Fetal Stomach	stomach
39	chr6:144763200-144770400	Weak transcription	Gastric	stomach
40	chr6:144763200-144771000	Weak transcription	Spleen	Spleen
41	chr6:144763200-144773800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr6:144763200-144773800	Strong transcription	Dnd41	blood
43	chr6:144763200-144781800	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:144763200-144783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:144763200-144790800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:144763200-144793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:144763400-144766800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:144763400-144767600	Weak transcription	GM12878-XiMat	blood
49	chr6:144763400-144767800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:144763400-144768200	Weak transcription	Muscle Satellite Cultured Cells	--

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