Variant report

Variant	rs61620395
Chromosome Location	chr6:144739767-144739768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs36000065	1.00[EUR][1000 genomes]
rs4364502	1.00[EUR][1000 genomes]
rs57126147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57360253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57902986	1.00[EUR][1000 genomes]
rs58152229	1.00[EUR][1000 genomes]
rs59256092	0.87[AMR][1000 genomes]
rs60896767	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6570629	1.00[EUR][1000 genomes]
rs6570631	1.00[EUR][1000 genomes]
rs6929203	1.00[EUR][1000 genomes]
rs73594975	0.87[AMR][1000 genomes]
rs73594978	0.87[AMR][1000 genomes]
rs73597053	0.87[AMR][1000 genomes]
rs73597078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73597094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598970	1.00[EUR][1000 genomes]
rs73598995	1.00[EUR][1000 genomes]
rs7740206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7747024	1.00[EUR][1000 genomes]
rs9321975	1.00[EUR][1000 genomes]
rs9496969	1.00[EUR][1000 genomes]
rs9496970	1.00[EUR][1000 genomes]
rs9496973	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144719600-144744000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:144719800-144743000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:144719800-144744400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:144720000-144743200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:144720000-144758200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:144720200-144744000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:144722400-144744000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:144723200-144743000	Weak transcription	Liver	Liver
9	chr6:144726800-144745200	Weak transcription	Fetal Stomach	stomach
10	chr6:144727000-144743000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:144727400-144743000	Weak transcription	Dnd41	blood
12	chr6:144728200-144744400	Weak transcription	Esophagus	oesophagus
13	chr6:144728400-144740000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:144728600-144743800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:144729600-144743000	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:144729600-144744000	Weak transcription	Ovary	ovary
17	chr6:144729600-144744400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:144729800-144761400	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:144733000-144739800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:144733000-144742800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:144733000-144743000	Weak transcription	GM12878-XiMat	blood
22	chr6:144733000-144744000	Weak transcription	Gastric	stomach
23	chr6:144733200-144740000	Weak transcription	Primary T cells from cord blood	blood
24	chr6:144733200-144743000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:144733200-144743000	Weak transcription	Fetal Thymus	thymus
26	chr6:144733200-144744000	Weak transcription	Fetal Lung	lung
27	chr6:144733200-144744000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:144733200-144744000	Weak transcription	Thymus	Thymus
29	chr6:144733200-144756800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:144733400-144740000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:144733400-144740200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:144733400-144744000	Weak transcription	Fetal Kidney	kidney
33	chr6:144734600-144740200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:144734600-144744000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:144735000-144740200	Weak transcription	Primary B cells from cord blood	blood
36	chr6:144736200-144741600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr6:144736200-144741800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:144737000-144744000	Weak transcription	Aorta	Aorta
39	chr6:144737000-144752200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:144737200-144740000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:144737200-144740200	Weak transcription	Pancreas	Pancrea
42	chr6:144737400-144744400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:144737600-144740000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:144737800-144739800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:144737800-144739800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:144737800-144739800	Weak transcription	Left Ventricle	heart
47	chr6:144737800-144740000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:144737800-144740000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:144737800-144740000	Weak transcription	Brain Substantia Nigra	brain
50	chr6:144737800-144740200	Weak transcription	Right Atrium	heart

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