Variant report

Variant	rs6570629
Chromosome Location	chr6:144755164-144755165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs36000065	1.00[EUR][1000 genomes]
rs4364502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57126147	1.00[EUR][1000 genomes]
rs57360253	1.00[EUR][1000 genomes]
rs57902986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58152229	1.00[EUR][1000 genomes]
rs60896767	1.00[EUR][1000 genomes]
rs61620395	1.00[EUR][1000 genomes]
rs6570631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73597078	1.00[EUR][1000 genomes]
rs73597094	1.00[EUR][1000 genomes]
rs73598970	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598995	1.00[EUR][1000 genomes]
rs7740206	1.00[EUR][1000 genomes]
rs7747024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496969	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144720000-144758200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:144729800-144761400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:144733200-144756800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:144737800-144755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:144737800-144756800	Weak transcription	Right Ventricle	heart
6	chr6:144738000-144755400	Weak transcription	HMEC	breast
7	chr6:144738000-144755400	Weak transcription	NHEK	skin
8	chr6:144738400-144757000	Weak transcription	Fetal Heart	heart
9	chr6:144739000-144756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:144739200-144755400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:144739200-144755600	Weak transcription	Small Intestine	intestine
12	chr6:144739200-144755600	Weak transcription	A549	lung
13	chr6:144740600-144758800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:144740800-144761200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:144740800-144761400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:144741000-144756800	Weak transcription	Right Atrium	heart
18	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:144741200-144760800	Weak transcription	Fetal Brain Male	brain
20	chr6:144742800-144761200	Weak transcription	Colonic Mucosa	Colon
21	chr6:144743000-144780200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr6:144744400-144759000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:144744400-144761400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:144744600-144756800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:144744600-144758600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:144744600-144758800	Weak transcription	Gastric	stomach
27	chr6:144744800-144755400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:144744800-144756000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:144744800-144758200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:144744800-144759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:144744800-144761600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:144744800-144761600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:144745600-144756800	Weak transcription	Ovary	ovary
34	chr6:144745600-144757000	Weak transcription	Fetal Stomach	stomach
35	chr6:144745600-144757200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:144745600-144758200	Weak transcription	Esophagus	oesophagus
37	chr6:144745600-144758600	Weak transcription	Lung	lung
38	chr6:144745600-144758600	Weak transcription	Spleen	Spleen
39	chr6:144745600-144759800	Weak transcription	Pancreas	Pancrea
40	chr6:144745800-144758600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:144747600-144756800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:144747600-144756800	Weak transcription	Thymus	Thymus
43	chr6:144747600-144758600	Weak transcription	Aorta	Aorta
44	chr6:144747800-144755400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:144747800-144756800	Weak transcription	Left Ventricle	heart
46	chr6:144748200-144758400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:144748200-144759400	Weak transcription	NHLF	lung
48	chr6:144751200-144756000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:144751200-144756800	Weak transcription	Psoas Muscle	Psoas
50	chr6:144751400-144756400	Weak transcription	Placenta	Placenta

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