Variant report

Variant	rs4364502
Chromosome Location	chr6:144758340-144758341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs36000065	1.00[EUR][1000 genomes]
rs57126147	1.00[EUR][1000 genomes]
rs57360253	1.00[EUR][1000 genomes]
rs57902986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58152229	1.00[EUR][1000 genomes]
rs60896767	1.00[EUR][1000 genomes]
rs61620395	1.00[EUR][1000 genomes]
rs6570629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73597078	1.00[EUR][1000 genomes]
rs73597094	1.00[EUR][1000 genomes]
rs73598970	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598995	1.00[EUR][1000 genomes]
rs7740206	1.00[EUR][1000 genomes]
rs7747024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496969	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144729800-144761400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:144740600-144758800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:144740800-144761200	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:144740800-144761400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:144741200-144760800	Weak transcription	Fetal Brain Male	brain
8	chr6:144742800-144761200	Weak transcription	Colonic Mucosa	Colon
9	chr6:144743000-144780200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr6:144744400-144759000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:144744400-144761400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:144744600-144758600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:144744600-144758800	Weak transcription	Gastric	stomach
14	chr6:144744800-144759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:144744800-144761600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:144744800-144761600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:144745600-144758600	Weak transcription	Lung	lung
18	chr6:144745600-144758600	Weak transcription	Spleen	Spleen
19	chr6:144745600-144759800	Weak transcription	Pancreas	Pancrea
20	chr6:144745800-144758600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:144747600-144758600	Weak transcription	Aorta	Aorta
22	chr6:144748200-144758400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:144748200-144759400	Weak transcription	NHLF	lung
24	chr6:144751800-144758800	Weak transcription	Fetal Kidney	kidney
25	chr6:144752000-144761200	Weak transcription	Fetal Brain Female	brain
26	chr6:144753000-144758400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:144753000-144771200	Weak transcription	Stomach Mucosa	stomach
28	chr6:144753800-144758600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:144753800-144758600	Weak transcription	GM12878-XiMat	blood
30	chr6:144755400-144763800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:144755400-144764400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:144755400-144770400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:144755400-144781200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:144755600-144758400	Strong transcription	HepG2	liver
35	chr6:144755600-144761000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:144755600-144761200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr6:144755600-144761400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:144755600-144762400	Strong transcription	Primary T cells from cord blood	blood
39	chr6:144755600-144780800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:144755800-144761000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:144755800-144761600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr6:144755800-144764400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:144756000-144759800	Strong transcription	Dnd41	blood
44	chr6:144756000-144761000	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr6:144756000-144763200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
47	chr6:144756200-144758400	Weak transcription	HMEC	breast
48	chr6:144756200-144758600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:144756200-144758800	Weak transcription	NH-A	brain
50	chr6:144756200-144761800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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